Locus 4726

Sequence ID 3L_DroMel_CAF1
Location 13,313,805 – 13,313,895
Length 90
Max. P 0.971165
window7444

overview

Window 4

Location 13,313,805 – 13,313,895
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 94.47
Mean single sequence MFE -19.49
Consensus MFE -17.36
Energy contribution -17.76
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.89
SVM decision value 1.67
SVM RNA-class probability 0.971165
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13313805 90 - 23771897
AUUGACAGGCGGUUCUAUCAAAUCACAAAGCCCAAAAC-CUCUUGCCAAAAUGUGGAAACCAUUUUUGUAGCUUGUCAAGAAGCAUAAUUU
.(((((((((((((..............))))......-....(((.((((((.(....))))))).))))))))))))............ ( -22.64)
>DroSec_CAF1 75519 90 - 1
AUUGACAGACGGUUCUAUCAAAUCACAAAGCCCAAAAC-CUCUAGCCAAAAUGUGGAACCAGUUUUUGUAGCUUGUCAAGAAGCAUAAUUU
.(((((....((((......))))...((((.(((((.-((....(((.....)))....)).)))))..)))))))))............ ( -14.30)
>DroSim_CAF1 76087 90 - 1
AUUGACAGGCGGUUCUAUCAAAUCACAAAGCCCAAAAC-CUCUAGCCAAAAUGUGGAAACAGUUUUUGUAGCUUGUCAAGAAGCAUAAUUU
.(((((((((((((..............))))......-.......(((((..((....))..)))))..)))))))))............ ( -20.14)
>DroEre_CAF1 78036 90 - 1
AUUGACAGGCGGUUCUAUCAAAUCACAAAGCCCAAAAC-CUCCAGCCAAAAUGUGGAAACAGUUUUUGUUGCUUGUCAAGAGGCAUAAUUU
.(((((((((((((..............))))......-.......(((((..((....))..)))))..)))))))))............ ( -19.94)
>DroYak_CAF1 82245 91 - 1
AUUGACAGGCGGUUCUAUCAAAUCACAAAGCCCAAACCAAUCCAGCCAAAAUGUGGAAACAGUUUUUGUUGCUUGUCAAGAGGCAUAAUUU
.(((((((((((((....................))))........(((((..((....))..)))))..)))))))))............ ( -20.45)
>consensus
AUUGACAGGCGGUUCUAUCAAAUCACAAAGCCCAAAAC_CUCUAGCCAAAAUGUGGAAACAGUUUUUGUAGCUUGUCAAGAAGCAUAAUUU
.(((((((((((((..............))))..............(((((..((....))..)))))..)))))))))............ (-17.36 = -17.76 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:42 2006