| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,313,271 – 13,313,420 |
| Length | 149 |
| Max. P | 0.800902 |
| Location | 13,313,271 – 13,313,382 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 98.19 |
| Mean single sequence MFE | -35.50 |
| Consensus MFE | -34.52 |
| Energy contribution | -34.30 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13313271 111 - 23771897 AGCUGCAGUGGCGUGUCCUUGAGGAGGGUGGAUGAAUGCAACAGCCGCAAGGGCGCUGGGUGGAAAACGAAGGACCCAAAACCACAACAAACCCGAGCAACAGCAAGUAGU .(((((.((((.(((((((((....((.((..((....)).)).)).)))))))))(((((............)))))...))))...........((....))..))))) ( -36.60) >DroSec_CAF1 74995 110 - 1 AGCUGCAGUGGCGUGUCCUUGAGGAGGGUGGAUGAAUGCAACAGCCGCAAGGGCGCUGGGUGGAAAACGAAGGAUCCA-AACCACAACAAACCCGAGCAACAGCAAGUAGU .(((((.((((.(((((((((....((.((..((....)).)).)).)))))))))....((((...(....).))))-..))))...........((....))..))))) ( -34.70) >DroSim_CAF1 75587 110 - 1 AGCUGCAGUGGCGUGUCCUUGAGGAGGGUGGAUGAAUGCAACAGCCGCAAGGGCGCAGGGUGGAAAACGAAGGAUCCA-AACCACAACAAACCCGAGCAACAGCAAGUAGU .(((((.((((.(((((((((....((.((..((....)).)).)).)))))))))....((((...(....).))))-..))))...........((....))..))))) ( -35.20) >consensus AGCUGCAGUGGCGUGUCCUUGAGGAGGGUGGAUGAAUGCAACAGCCGCAAGGGCGCUGGGUGGAAAACGAAGGAUCCA_AACCACAACAAACCCGAGCAACAGCAAGUAGU .(((((.((((.(((((((((....((.((..((....)).)).)).))))))))).((((............))))....))))...........((....))..))))) (-34.52 = -34.30 + -0.22)
| Location | 13,313,311 – 13,313,420 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 93.94 |
| Mean single sequence MFE | -39.12 |
| Consensus MFE | -34.38 |
| Energy contribution | -34.98 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.800902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13313311 109 - 23771897 UGGGUGCAUUUUAAUGGCACUCGGAGCGAAUACUUUCCAGCUGCAGUGGCGUGUCCUUGAGG---AGGGUGGAUGAAUGCAACAGCCGCAAGGGCGCUGGGUGGAAAACG-----AA .((((((.........))))))...........((((((.((((....))(((((((((...---.((.((..((....)).)).)).))))))))).)).))))))...-----.. ( -36.90) >DroSec_CAF1 75034 109 - 1 UGGGUGCAUUUUAAUGGCACUCGGAGCGUAUCCUUUCCAGCUGCAGUGGCGUGUCCUUGAGG---AGGGUGGAUGAAUGCAACAGCCGCAAGGGCGCUGGGUGGAAAACG-----AA .((((((.........))))))(((.....)))((((((.((((....))(((((((((...---.((.((..((....)).)).)).))))))))).)).))))))...-----.. ( -39.60) >DroSim_CAF1 75626 109 - 1 UGGGUGCAUUUUAAUGGCACUCGGAGCGAAUCCUUUCCAGCUGCAGUGGCGUGUCCUUGAGG---AGGGUGGAUGAAUGCAACAGCCGCAAGGGCGCAGGGUGGAAAACG-----AA .((((((.........))))))(((.....)))((((((.((((....))(((((((((...---.((.((..((....)).)).)).))))))))).)).))))))...-----.. ( -40.20) >DroEre_CAF1 77554 111 - 1 UGGGUGCAUUUUAAUGGCACUCGGAGCGAAUCCUUGCCAGCUGCAGUGGCGUGUCCUUGAGGAGGAGGGUGGCUGAAUGCAACAGCCGCAAGGGCGCAGGA-GGAAAACG-----AA .((((((.........))))))....((..(((((((((.(....)))))(((((((((....((...((.((.....)).))..)).)))))))))..))-)))...))-----.. ( -40.10) >DroYak_CAF1 81768 114 - 1 UGGGUGCAUUUUAAUGGCACUCGGAGCGAAUCCUUUCCAGCUGCACUGGCGUGUCCUUGAGG---AGGGUGGAUGAAUGCAACAGCCGCAAGGGCGCAGGAUGGAAAACGGAGGGAA .((((((.........))))))(((.....)))(((((((((.....)))(((((((((...---.((.((..((....)).)).)).)))))))))....)))))).......... ( -38.80) >consensus UGGGUGCAUUUUAAUGGCACUCGGAGCGAAUCCUUUCCAGCUGCAGUGGCGUGUCCUUGAGG___AGGGUGGAUGAAUGCAACAGCCGCAAGGGCGCAGGGUGGAAAACG_____AA .((((((.........))))))(((.....)))((((((.((((....))(((((((((.......((.((..((....)).)).)).))))))))).)).)))))).......... (-34.38 = -34.98 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:41 2006