Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,306,359 – 13,306,464 |
Length | 105 |
Max. P | 0.921052 |
Location | 13,306,359 – 13,306,464 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 52.43 |
Mean single sequence MFE | -24.27 |
Consensus MFE | -12.91 |
Energy contribution | -12.35 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.54 |
Mean z-score | -1.31 |
Structure conservation index | 0.53 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921052 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13306359 105 + 23771897 GCUCAGAGCCAAAGGGAGUUCCCAUCUCCAUCCCCAUCC-----CGGAUCUCCAUUUCCAUCCCGGAUCCCCAACUCCCUGGCCUUUGUCCGAUGUCAGCAUUGUCUGUU ...((((((((..(((((((...................-----.(((........))).....((....))))))))))))).......(((((....))))))))).. ( -27.00) >DroGri_CAF1 71990 99 + 1 AUGUUAACACUGUCGGUCCACGC------GACAGCGGAU-----AUAACCAAUACCUUGAAGAUGGUACGGACUGUUUGAUCUCGAAUAUAAUCAAGUCAGGUCACUAAG .........(((.((((((.(((------....)))...-----........((((........)))).)))))(((((....)))))........).)))......... ( -21.50) >DroSec_CAF1 68475 99 + 1 GCUCAGAGCCAAAGGGAGUCCCC------AUCCCCAUCC-----CGGAUCUCCAUUUCCAUCCCGGAUCCCCAACUCCCUGGCCUUUGUCCGAUGUCAGCAUUGUCUGUU ...((((((((..((((((....------((((......-----.(((........))).....)))).....)))))))))).......(((((....))))))))).. ( -26.40) >DroYak_CAF1 74890 104 + 1 GCUCAGAGCCAAGGGGAGUCCCCAUCCC------UAUCCCCAUCCACAUCCCUAUCUGCAUCCAGGAUCCCCAACUCCCUGGCCUUUGUCCGAUGUCAGCAUUGUCUGUU ...((((((((..((((((....((((.------..............................)))).....)))))))))).......(((((....))))))))).. ( -22.18) >consensus GCUCAGAGCCAAAGGGAGUCCCC______AUCCCCAUCC_____CGGAUCUCCAUCUCCAUCCCGGAUCCCCAACUCCCUGGCCUUUGUCCGAUGUCAGCAUUGUCUGUU ...(((((((..(((((((..........................(((........))).....((....)).)))))))))).......(((((....))))))))).. (-12.91 = -12.35 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:38 2006