Locus 4721

Sequence ID 3L_DroMel_CAF1
Location 13,302,458 – 13,302,563
Length 105
Max. P 0.962605
window7437

overview

Window 7

Location 13,302,458 – 13,302,563
Length 105
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 81.25
Mean single sequence MFE -24.52
Consensus MFE -17.26
Energy contribution -19.77
Covariance contribution 2.50
Combinations/Pair 1.19
Mean z-score -2.31
Structure conservation index 0.70
SVM decision value 1.54
SVM RNA-class probability 0.962605
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13302458 105 - 23771897
AUCAUUACUA-------------AUAUAUU-ACAGAUUAUUAGCUUAGCGCUAAUGCCAUUUUUGUUUCAACUUUUAUGCCCUUUCCUCCACUGUGGCUAGUUGGGGCAAAAGUGAAAA
..........-------------.......-......(((((((.....))))))).(((((((((..(((((.....((((...........).))).)))))..))))))))).... ( -27.70)
>DroSec_CAF1 64470 104 - 1
AUCAUUACUA-------------AUAUAUU-ACAGAUUAUUAGCUUACCGCC-AUGCCAUUUUUGUUUCACCUUUUAUGCCUUUUCCUCCACUGUGGCUAGUUGGGGCAAAAGUGAAAA
.......(((-------------(((....-......)))))).........-....(((((((((..((.((.....(((..............))).)).))..))))))))).... ( -20.14)
>DroSim_CAF1 65097 105 - 1
AUCAUUACUA-------------AUAUAUU-ACAGAUUAUUAGCUAUCCGCUAAUGCCAUUUUUGCUUCACCUUUUAUGCCUUUUCCACCACUGUGGCUAGUUGGAGCAAAAGUGAAAA
..........-------------.......-......(((((((.....))))))).(((((((((((((.((.....(((..............))).)).))))))))))))).... ( -26.04)
>DroEre_CAF1 65455 114 - 1
AUAAUUACUAUCUAGGGAGAGCACUAUAUAAACAGAUU---AAAUUACCUCCAAUGCCAUUGUUGG-UCAACUUUUGUGCCUUUUCCUCCACUGUGGCUAGUGGACGUA-AAGUGAAAA
....(((((.....((((((((((....(((.....))---)........(((((......)))))-.........))).)))))))(((((((....)))))))....-.)))))... ( -24.20)
>consensus
AUCAUUACUA_____________AUAUAUU_ACAGAUUAUUAGCUUACCGCCAAUGCCAUUUUUGUUUCAACUUUUAUGCCUUUUCCUCCACUGUGGCUAGUUGGGGCAAAAGUGAAAA
.....................................(((((((.....))))))).((((((((((((((((.....(((..............))).)))))))))))))))).... (-17.26 = -19.77 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:35 2006