| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,300,204 – 13,300,300 |
| Length | 96 |
| Max. P | 0.792236 |
| Location | 13,300,204 – 13,300,300 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 73.92 |
| Mean single sequence MFE | -20.05 |
| Consensus MFE | -7.83 |
| Energy contribution | -7.63 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.792236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13300204 96 + 23771897 ----UCCUUUUGAAUCGCCUGUCACAUAAUAUGGACAAUCACUAACCACGAAAGUGUCAAACAAACAAAACGAGCCCAAGGCCUGCUCU-CUCCUCGACCU ----....(((((......((((.(((...))))))).........(((....)))))))).........((((.....((....))..-...)))).... ( -15.00) >DroGri_CAF1 65142 91 + 1 GCUCGUCUGUCACACAGUGUGUCACAUAAUAUGGACAAUCACUAACCACGCAAGUGUCAAACAAACAAAACGAGUGCAGGGCAUCCGUAA----------C (((...(((.(((..((((((((.(((...)))))))..))))...(((....))).................)))))))))........----------. ( -20.50) >DroEre_CAF1 63136 95 + 1 ----UCCUUUUCAAUCGUCCGUCACAUAAUAUGGACAAUCACUAACCACGAAAGUGUCAAACAAACAAAACGAGCCCAAGG-CUGCUCC-CUCCUGGAGCU ----............((((((........))))))..........(((....)))................((((...))-))(((((-.....))))). ( -23.20) >DroYak_CAF1 65526 97 + 1 --U-UCCUUUUGAAUCGUCUGUCACAUAAUAUGGACAAUCACCCACCACGAAAGUGUCAAACAAACAAAACAAGCCCAAGGCCUGCUCC-CCCCUCGAGCU --.-....(((((...((((((........))))))..........(((....))))))))............(((...)))..((((.-......)))). ( -17.50) >DroMoj_CAF1 73297 90 + 1 GCUCGUCUGUCACACAGUGUGUCACAUAAUAUGGACAAUCACUAACCACGCAAGUGUCAAACAAACAAAACGAGCGCAAGGCAUCCGCA-----------C ((((((.(((.....((((((((.(((...)))))))..))))...(((....)))........)))..)))))).....((....)).-----------. ( -22.60) >DroAna_CAF1 59674 94 + 1 GUU-CUCUUUUGAGAAGAAUGUCACAUAAUAUGGACAGUCAGUAACCACGCAAGUGUUAAACAAACAAAACGAGUCGAAUAC--ACUCG-CUC---AGCCU .((-(((....)))))((.((((.(((...))))))).))..((((.((....))))))............(((.(((....--..)))-)))---..... ( -21.50) >consensus __U_UCCUUUUGAAUAGUCUGUCACAUAAUAUGGACAAUCACUAACCACGAAAGUGUCAAACAAACAAAACGAGCCCAAGGCCUGCUCA_CUC___GA_CU .....(((...........((((.(((...))))))).........(((....)))......................))).................... ( -7.83 = -7.63 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:35 2006