| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,296,314 – 13,296,422 |
| Length | 108 |
| Max. P | 0.851126 |
| Location | 13,296,314 – 13,296,422 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.80 |
| Mean single sequence MFE | -33.84 |
| Consensus MFE | -19.42 |
| Energy contribution | -22.19 |
| Covariance contribution | 2.77 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.851126 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13296314 108 + 23771897 UCGUCA-----------AAAAUGAAUAUGCGCAUAGGAUGCGGCGGAAAUAUUAAGCAUACGCCGCGUGUGUGAGUGCCUGCCGUGUCUAUGCGGCAUGGUGA-AAAUUACGAAAACGGC ((((..-----------........(((((((((((.(((((((((..((.....(((((((...)))))))..))..))))))))))))))).)))))....-.....))))....... ( -36.81) >DroSim_CAF1 59072 108 + 1 UCGUCA-----------AAAAUGAAUAUGCGCAUAGGAUGCGGCGGAAAUAUUAAGCAUACGCCGCGUGUGUGAGUGCCUGCCGUGUCUAUGCGGCAUAGUGA-AAAUUACGAAAACGGC ((((..-----------........(((((((((((.(((((((((..((.....(((((((...)))))))..))..))))))))))))))).)))))....-.....))))....... ( -37.11) >DroEre_CAF1 59224 107 + 1 UCGUCA-----------AAAAUGAAUAUGCGCAUAGGAUGCGGCGGAAAUAUUAAGCAUACGCCGCGUGUGCGAGUGCCUGCCGUGUCUAUGCCGCAUGGUGA-AAAUUACAAAAACGG- .(((..-----------........(((((((((((.(((((((((..((.....(((((((...)))))))..))..)))))))))))))).))))))((((-...))))....))).- ( -37.00) >DroWil_CAF1 76650 109 + 1 UCGUCAUCGUCAUAGUCAAAAUGAAUAUGCGCAUAG-UUGCUGCGGAAAUAUUAAGCAUACGCCCUGUGAGUGUGUGCAU---------AUACCGCAACGCGCGAAAAGGUAAAAAUGG- ((((.....((((.......))))....(((((...-.)))(((((..((((...((((((((.......))))))))))---------)).)))))..))))))..............- ( -25.90) >DroYak_CAF1 61928 108 + 1 UCGUCA-----------AAAAUGAAUAUGCGCAUAGGAUGCGGCGGAAAUAUUAAGCAUACGCCGCGUGUGUGAGUGCCUGCCGUGUCUAUGCGGCAUGGUGA-AAAUGACGAAAACGGC ((((((-----------........(((((((((((.(((((((((..((.....(((((((...)))))))..))..))))))))))))))).)))))....-...))))))....... ( -41.56) >DroAna_CAF1 56609 108 + 1 UCGUCA-----------AAAAUGAAUAAGCGCAUAGGAUGCGGCGAAAAUAUUAAGCAUACGCCGCGUGUGCCAGAGUUUCCUCUCCUGACGUCAAAAAGCUU-GAGUUACAUACAUGGU .(((((-----------...........((((((.....((((((...............)))))))))))).((((....))))..)))))((((.....))-)).............. ( -24.66) >consensus UCGUCA___________AAAAUGAAUAUGCGCAUAGGAUGCGGCGGAAAUAUUAAGCAUACGCCGCGUGUGUGAGUGCCUGCCGUGUCUAUGCCGCAUGGUGA_AAAUUACAAAAACGGC .........................((((((((((.((((((((((.........(((((((...)))))))......))))))))))))))).)))))..................... (-19.42 = -22.19 + 2.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:31 2006