| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,291,978 – 13,292,083 |
| Length | 105 |
| Max. P | 0.813816 |
| Location | 13,291,978 – 13,292,083 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.17 |
| Mean single sequence MFE | -27.67 |
| Consensus MFE | -14.70 |
| Energy contribution | -14.32 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.813816 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13291978 105 - 23771897 UUGGCAAGUCACUUUUCAACAUUUUCCGCG---------AG-CCGUGAAGCAAUCAAUAUUGAUUGCAUAAUGAAUGACAAUCAGCGCU---GCGCUUGACACUCGACCCCAAACCUC-- ((((...((((...((((........((((---------..-.))))..(((((((....)))))))....))))))))..((((((..---.))).))).........)))).....-- ( -22.30) >DroVir_CAF1 47471 112 - 1 UUGGCAAGUCACUUUUCAGUGGUUGUCGCGUUGC--UGUUC-CCACAAAGCAAUCAAUAUUGAUUGCAUAAUGAAUGACAAUCAAUGCU---GCGUUUGACACUUUCCAUUUUAACAC-- .(((.((((((((....))))((((.((((((((--(....-......))))))...((((((((((((.....))).)))))))))..---)))..)))))))).))).........-- ( -27.50) >DroGri_CAF1 52906 112 - 1 UUGCCGAGUCACUUUUCAAUGGCUGCCGCGUUGC--UGAGU-CCACACAGCAAUCAAUAUUGAUUGCAUAAUGAAUGACAAUCAAUGCA---GCGUUUGACACUUUCCACUUAAACAC-- .....((((......((((..(((((...(((((--((.(.-...).)))))))....(((((((((((.....))).)))))))))))---))..))))........))))......-- ( -28.24) >DroWil_CAF1 69463 116 - 1 UUGGCAAGUCACUUUUCAACAUUUUGUGCGUUGAGUGG-AGCCCGCGAAGCAAUCAAUAUUGAUUGCAUAAUGAAUGACAAUCAACGCUCUGGCGCUUGACACUUGCC---AUUUCUCUA .((((((((......(((((.........)))))((.(-((((((((..(((((((....)))))))....(((.......))).)))...)).)))).)))))))))---)........ ( -36.70) >DroMoj_CAF1 61452 112 - 1 UUGGCAAGUCACUUUUCAGUGGCUGGCGCGCUGC--UCUCG-CCACACAGUCAUCAAUAUUGAUUGCAUAAUGAAUGACAAUCAAUGCU---GCGUUUGACACUUUCCAUUUAAGCAC-- .(((.((((.........(((((.((.((...))--.)).)-))))...((((.((.((((((((((((.....))).))))))))).)---)....)))))))).))).........-- ( -31.70) >DroAna_CAF1 53138 101 - 1 UUGACAAGUCACUUUUUAGCAUUUUCCGUG---------AA-GCGUAAAGCAAUCAAUAUUGGUUGCAUAAUGAAUGACAAUCUGAGGU---GCUCCUGACAUUGGUCCUUGAU------ ..(((..((((......((((((((..((.---------(.-.(((...(((((((....)))))))...)))..).)).....)))))---)))..))))....)))......------ ( -19.60) >consensus UUGGCAAGUCACUUUUCAACAGUUGCCGCGUUGC__UG_AG_CCACAAAGCAAUCAAUAUUGAUUGCAUAAUGAAUGACAAUCAAUGCU___GCGCUUGACACUUGCCAUUUAAACAC__ .......((((......................................(((((((....)))))))................(((((....)))))))))................... (-14.70 = -14.32 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:30 2006