Locus 4715

Sequence ID 3L_DroMel_CAF1
Location 13,290,619 – 13,290,710
Length 91
Max. P 0.900238
window7430

overview

Window 0

Location 13,290,619 – 13,290,710
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 91.06
Mean single sequence MFE -26.72
Consensus MFE -23.99
Energy contribution -23.77
Covariance contribution -0.22
Combinations/Pair 1.23
Mean z-score -1.65
Structure conservation index 0.90
SVM decision value 1.01
SVM RNA-class probability 0.900238
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13290619 91 - 23771897
ACUGGCUGCAUCAACGGGGUAUUCAUUUCCUGUUUGUUACGGUCCAGACUGAAAACUCUCUGGAGCGAACGGACCAGAAACUGAAGCAUCC
...((.(((.(((..((((........))))(((((((.((.((((((..(....)..)))))).))))))))).......))).))).)) ( -28.00)
>DroSec_CAF1 52614 91 - 1
AUUCGCUGCAUCAACGGGGUAUUCAUUUCCUGUUUGUUACGGUCCAGACUGAAAACUCUCUGGAGCGAACGGACCAGAAACUGAAGCAUCC
................((((.((((((((..(((((((.((.((((((..(....)..)))))).)))))))))..)))).))))..)))) ( -27.20)
>DroSim_CAF1 53209 91 - 1
AUUCGCUGCAUCAACGGGGUAUUCAUUUCCUGUUUGUUACGGUCCAGACUGAAAACUCUCUGGAGCGAACGGACCAGAAACUGAAGCAUCC
................((((.((((((((..(((((((.((.((((((..(....)..)))))).)))))))))..)))).))))..)))) ( -27.20)
>DroEre_CAF1 53519 91 - 1
AUUCGAUGCAUCGACGGGGUAUUCAUUUCCUGUUUGUUACGGUCCAGACUGCAAACUCUCUGGAGCGAACGGACCAGAAACUGAAGCAUCC
....((((((((.....))).((((((((..(((((((.((.((((((..(....)..)))))).)))))))))..)))).))))))))). ( -30.50)
>DroYak_CAF1 55803 87 - 1
AUUCGCUGCAUCGACGGGGUAUUCAUUUCCUGUUUGUUACGGUCCAGACUGAAAACUC----GAGCGAGCGGACCAGAAACUGAAGCAUUC
.((((((((.(((((((((........))))).......((((....)))).....))----)))).)))))).................. ( -21.50)
>DroAna_CAF1 52080 91 - 1
UUUCUCUCUAUCAACGGGGUAUUCAUUUCCUGUUUGUUACGGUCGGGACUCAAAAACCUCUCGAGCGAACGAGCCAGAAACUGAAGUAUCC
................(((((((((((((..(((((((.((.((((((..........)))))).)))))))))..)))).)).))))))) ( -25.90)
>consensus
AUUCGCUGCAUCAACGGGGUAUUCAUUUCCUGUUUGUUACGGUCCAGACUGAAAACUCUCUGGAGCGAACGGACCAGAAACUGAAGCAUCC
...............(((...((((((((..(((((((.((.((((((..........)))))).)))))))))..)))).))))...))) (-23.99 = -23.77 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:29 2006