Locus 4714

Sequence ID 3L_DroMel_CAF1
Location 13,288,825 – 13,288,922
Length 97
Max. P 0.832636
window7429

overview

Window 9

Location 13,288,825 – 13,288,922
Length 97
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 84.29
Mean single sequence MFE -32.60
Consensus MFE -22.54
Energy contribution -22.76
Covariance contribution 0.23
Combinations/Pair 1.32
Mean z-score -3.39
Structure conservation index 0.69
SVM decision value 0.72
SVM RNA-class probability 0.832636
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13288825 97 - 23771897
UCCUUUUAUAGCCUGUCUGGACGCAUCGUCGUCACUUUGUCGACGAUGCGGG-------------CAACCGGGCGCAUGAUAAUUUCCAAUGCCAAUUCCUUCAUCCUUC
..........(((((..((..((((((((((.(.....).))))))))))..-------------))..)))))((((...........))))................. ( -34.60)
>DroSec_CAF1 50597 99 - 1
UCCUUUUAUAGCCUGUCUGGACGCAUCGUCGUCACUUUGUCGACGAUGCGGGCG-----------CAACCGGGCGCAUGAUAAUUUCCAAUGCCAAUUCCUUCAUCCUUC
..........(((((..(((.((((((((((.(.....).))))))))))..).-----------))..)))))((((...........))))................. ( -32.80)
>DroSim_CAF1 51169 99 - 1
UCCUUUUAUAGCCUGUCUGGACGCAUCGUCGUCACUUUGUCGACGAUGCGGGCG-----------CAACCGGGCGCAUGAUAAUUUCCAAUGCCAAUUCCUUCAUCCUUC
..........(((((..(((.((((((((((.(.....).))))))))))..).-----------))..)))))((((...........))))................. ( -32.80)
>DroEre_CAF1 51535 97 - 1
UCCUUUUAUGGCCUGUCUGGACGCAUCGUCGUCACUUUGUCGACGAUGCGGG-------------CAACCGGGCGCAUGAUAAUUUCCAAUGCCAAUUCCUUUAUCCUUC
.....((((((((((..((..((((((((((.(.....).))))))))))..-------------))..))))).))))).............................. ( -35.50)
>DroYak_CAF1 53778 97 - 1
UCCUUUUAUGGCCUGUCUGGACGCAUCGUCGUCACUUUGUCGACGAUGCGGG-------------UAACCGGGCGCAUGAUAAUUUCCAAUGCCAAUUCCUUUAUCCUUC
.....((((((((((..((..((((((((((.(.....).))))))))))..-------------))..))))).))))).............................. ( -34.10)
>DroMoj_CAF1 58007 100 - 1
UCCUUUUAUGGCCUGUCUGGUCGCGUUGUCGUCACUUUGUCUGCGGCAUCGUCGCCAGUCGCCGCCAGCUCAGCUC---AUAAUUUCCAAUGCCAACUAUUUU-------
.....(((((..(((.(((((.((((((.((..((..(((.....)))..)))).))).))).)))))..)))..)---))))....................------- ( -25.80)
>consensus
UCCUUUUAUAGCCUGUCUGGACGCAUCGUCGUCACUUUGUCGACGAUGCGGG_____________CAACCGGGCGCAUGAUAAUUUCCAAUGCCAAUUCCUUCAUCCUUC
..........(((((..((..((((((((((.(.....).))))))))))...............))..)))))((((...........))))................. (-22.54 = -22.76 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:28 2006