Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,286,912 – 13,287,008 |
Length | 96 |
Max. P | 0.576602 |
Location | 13,286,912 – 13,287,008 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 76.97 |
Mean single sequence MFE | -21.50 |
Consensus MFE | -13.43 |
Energy contribution | -15.43 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.16 |
Mean z-score | -1.68 |
Structure conservation index | 0.62 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576602 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13286912 96 - 23771897 UGUCUUGAGGGUUUUGCCUCUUAGGGC----------CAUUUGUCAAGCAAAUUGGAAUGUUU---AGUUUAUUAGUGCUUUUUAAUACUAUUUUUUGUCUCCAAGGCU-- .((((((((((.....)).))))))))----------.........(((...((((((((...---(((.((((((......))))))..)))...))).))))).)))-- ( -20.40) >DroSec_CAF1 48633 96 - 1 UGUCUUGGGGGUUUUGCCUCUGAGGGC----------UAUUUGUCAAGCAAAUUGGAAUUUUU---AGUUUAUUAGUGCUUUUUAAUAAUAUUUUUUGGCUCCAAGGCC-- .(((((((((.....((((....))))----------...(((..(((((.....((((....---.)))).....)))))..))).............))))))))).-- ( -24.20) >DroSim_CAF1 49203 96 - 1 UGUCUUGGGGGUUUUGCCUCUGAGGGC----------UAUUUGUCAAGCAAAUUGGAAUGUUU---AGUUUAUUAGUGCUUUUUAAUAAUAUUUUUUGGCCCCAAGGCC-- .(((((((((.....((((....))))----------...(((..(((((.....((((....---.)))).....)))))..))).............))))))))).-- ( -27.40) >DroEre_CAF1 49513 106 - 1 AAUCUUGGGGGUUUUCCUU--UGGGGCUAAACACAUUUAUUUGUCAAAAAAUUUGAAUUCUUUUUUAUUUUAUAUGUACUUUUUAACAAUAUUCUUUGACUCU---UCCAA ..(((..((((....))))--..)))................((((((((((..(((....)))..)))))...(((........))).......)))))...---..... ( -14.00) >consensus UGUCUUGGGGGUUUUGCCUCUGAGGGC__________UAUUUGUCAAGCAAAUUGGAAUGUUU___AGUUUAUUAGUGCUUUUUAAUAAUAUUUUUUGGCUCCAAGGCC__ .(((((((((.....((((....)))).............(((..(((((.....((((........)))).....)))))..))).............)))))))))... (-13.43 = -15.43 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:27 2006