| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,283,580 – 13,283,696 |
| Length | 116 |
| Max. P | 0.836808 |
| Location | 13,283,580 – 13,283,696 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 93.00 |
| Mean single sequence MFE | -23.26 |
| Consensus MFE | -17.98 |
| Energy contribution | -19.22 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.836808 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13283580 116 - 23771897 CCAUUGAAAAUUGCUCUAAAUUCGGUUGGCAAAUGUUUGGUAAACUAAUCAACUUCUACGCAUCUCGACC---AGCAAUAAAUCGAAUUCAAUAUAGAGCAUUUUUCUGAUGAAUCUAA .(((((((((.((((((((((((((((.((...((.((((....)))).)).......((.....))...---.))....))))))))).....))))))).))))).))))....... ( -27.10) >DroSec_CAF1 45313 119 - 1 CCAUUGAAAAUUGCUCUAAAUUUGGAUGGCAAAUGUUUGGCAAACUAAUCAACUUCUACGCAUCUUCAGCAACAGAAAUAAAUCGAAUUCAAUAUAGAGCAUUUUUCUGAUGAAUCUAA .(((((((((.(((((((...((((((..(...((.((((....)))).))..((((..((.......))...)))).......).))))))..))))))).))))).))))....... ( -23.90) >DroSim_CAF1 45871 116 - 1 CCAUUGAAAAUUGCUCUAAAUUCGGAUGGCAAAUGUUUGGUAAACUAAUCAACUUCUACGCAUCUCGACC---AGCAAUAAAUCGAAUUCAAUAUAGAGCAUUUUUCUGAUGAAUCUAA .(((((((((.((((((((((((((........((.((((....)))).))........((.........---.))......))))))).....))))))).))))).))))....... ( -23.40) >DroEre_CAF1 46079 116 - 1 CCAUUGAAAAUUGCUCCAAAUUCGGAUGGCAAAUGUUUGGGAAACUAAUCAACUUCUACGCAUCUCAACC---AGCAAUAAAUCGAACUCAAUAUAGAGCACUUUUCUGACGAAUCUAA .....(((((.(((((....(((((........((.((((....)))).))........((.........---.))......))))).........))))).)))))............ ( -17.72) >DroYak_CAF1 48506 116 - 1 CCAAUGAAAAUUGCUCUAAAUUCAGAUGGCAAAUGUUUGGGAAACUAAUCAACUUCUACGCAUCUCACCG---AGCAAUAAAUCGAAUUCAAUAUAGAGCAUUUUUCUGACGAAUCUAA .....(((((.((((((((((((.(((......((.((((....)))).))........((.((.....)---))).....)))))))).....))))))).)))))............ ( -24.20) >consensus CCAUUGAAAAUUGCUCUAAAUUCGGAUGGCAAAUGUUUGGGAAACUAAUCAACUUCUACGCAUCUCAACC___AGCAAUAAAUCGAAUUCAAUAUAGAGCAUUUUUCUGAUGAAUCUAA .(((((((((.((((((((((((((........((.((((....)))).))........((.............))......))))))).....))))))).))))).))))....... (-17.98 = -19.22 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:26 2006