Locus 4711

Sequence ID 3L_DroMel_CAF1
Location 13,282,520 – 13,282,621
Length 101
Max. P 0.896320
window7426

overview

Window 6

Location 13,282,520 – 13,282,621
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 91.29
Mean single sequence MFE -34.12
Consensus MFE -29.66
Energy contribution -31.18
Covariance contribution 1.52
Combinations/Pair 1.06
Mean z-score -1.54
Structure conservation index 0.87
SVM decision value 0.99
SVM RNA-class probability 0.896320
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13282520 101 - 23771897
GGCGAAAGGAGCUGCUCGGCUACUGGGCGGCACAAAGCGCCAUAAACGUGGCCAUCAGAUGAAGGACACUGCACCGUGGUUACAGAAUCAUCAAGAGUCAG
((((....(.(((((((((...))))))))).)....))))......(((((((((((.((.....)))))....)))))))).((.((.....)).)).. ( -34.00)
>DroSec_CAF1 44224 101 - 1
GGCGAAAGGAGCUGCUCGGCUACUGGGCGGCACAAAGCGCCAUAAACGUGUCCAUCAGCUGAAGGACACUGCACCGUGGUUACAGAAUCAUCAAGAGUCAG
((((....(.(((((((((...))))))))).)....))))......((((((.((....)).))))))......((((((....)))))).......... ( -35.40)
>DroSim_CAF1 44816 101 - 1
GGCGAAAGGAGCUGCUCGGCUACUGGGCGGCACAAAGCGCCAUAAACGUGGCCAUCAGCUGAAGGACACUGCACCGUGGUUACAGAAUCAUCAAGAGUCAG
((((....(.(((((((((...))))))))).)....))))......(((((((((((.((.....)))))....)))))))).((.((.....)).)).. ( -34.00)
>DroEre_CAF1 45011 93 - 1
GGCGAAAUGAGC--------UGCUGGGCGGCACAAAGCGCCAUAAACGUGGCCAUCAGAUGAAGGACACUGCACCGUGGUCACAGAGUCUUCAAGAGUCUU
((((...((.((--------(((...))))).))...))))......(((((((((((.((.....)))))....))))))))(((.((.....)).))). ( -32.00)
>DroYak_CAF1 47388 101 - 1
GGCGAAAGGAGCUGCUCAGCUGCUGUGCGGCACAAAGCGCCAUAAACGUGGCCAUCAGAUGAAGGACACUGCACCGUGGUUACAGAGUCCUCAGGAGUCAG
((((....(.(((((.(((...))).))))).)....))))......(((((((((((.((.....)))))....)))))))).((.(((...))).)).. ( -35.20)
>consensus
GGCGAAAGGAGCUGCUCGGCUACUGGGCGGCACAAAGCGCCAUAAACGUGGCCAUCAGAUGAAGGACACUGCACCGUGGUUACAGAAUCAUCAAGAGUCAG
((((....(.(((((((((...))))))))).)....))))......(((((((((((.((.....)))))....)))))))).((.((.....)).)).. (-29.66 = -31.18 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:25 2006