Locus 4710

Sequence ID	3L_DroMel_CAF1
Location	13,282,004 – 13,282,095
Length	91
Max. P	0.820087

overview

Window 5

Location	13,282,004 – 13,282,095
Length	91
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	94.66
Mean single sequence MFE	-18.82
Consensus MFE	-15.76
Energy contribution	-15.96
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-1.57
Structure conservation index	0.84
SVM decision value	0.68
SVM RNA-class probability	0.820087
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13282004 91 - 23771897
GUGCAAACAAAAGCGCAGCAGUAGCAGCUGACUUGGAAGAAUUGAAGGAAGAUGUUGCAAGGAUUCAGGACUAGGAAUU--GAGGUGGCGAAA
((((........)))).((.((((((.((..(((.((....)).)))..)).))))))...(((((........)))))--......)).... ( -21.30)
>DroSec_CAF1 43750 91 - 1
GUGCAAACAAAAGCGCAGCAGUAGCAGCUGACUUGGAAGAAUUGAAGGAAGAUGUUGCAAGGAAUCAGGACUAGGAAUU--GAGGUGGCGAAA
((((........)))).((.((((((.((..(((.((....)).)))..)).))))))......((((.........))--))....)).... ( -19.40)
>DroSim_CAF1 44351 91 - 1
GUGCAAACAAAAGCGCAGCAGUAGCAGCUGACUUGGAAGAAUUGAAGGAAGAUGUUGCAAGGAAUCAGGACUAGGAAUU--GAGGUGGCGAAA
((((........)))).((.((((((.((..(((.((....)).)))..)).))))))......((((.........))--))....)).... ( -19.40)
>DroEre_CAF1 44625 91 - 1
GGGCAAACAAAAGCGCAGCAGUAGCAGCUGACUUGGAAGAAUUGAAGGAAGAUGUGGCGGGAAAUCAGGACUAGGAGUU--GAGGUAGCGAAA
(.((........)).).((.((.(((.((..(((.((....)).)))..)).))).)).....(((..(((.....)))--..))).)).... ( -15.50)
>DroYak_CAF1 46880 93 - 1
GAGCAAACAAAAGCGCAGCAGUAGCAGCUGACUUGGAAGAAUUGAAGGAAGAUGUUGCAAGAAAUCAGGACUAGGAAUUGUGAGGUGGCGAGA
.............(((.((.((((((.((..(((.((....)).)))..)).))))))......(((.((.......)).))).)).)))... ( -18.50)
>consensus
GUGCAAACAAAAGCGCAGCAGUAGCAGCUGACUUGGAAGAAUUGAAGGAAGAUGUUGCAAGGAAUCAGGACUAGGAAUU__GAGGUGGCGAAA
.............(((.((.((((((.((..(((.((....)).)))..)).))))))......((........))........)).)))... (-15.76 = -15.96 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:24 2006