Locus 471

Sequence ID 3L_DroMel_CAF1
Location 1,342,017 – 1,342,120
Length 103
Max. P 0.667624
window696

overview

Window 6

Location 1,342,017 – 1,342,120
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 70.71
Mean single sequence MFE -26.45
Consensus MFE -5.70
Energy contribution -6.14
Covariance contribution 0.44
Combinations/Pair 1.14
Mean z-score -1.76
Structure conservation index 0.22
SVM decision value 0.28
SVM RNA-class probability 0.667624
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1342017 103 - 23771897
ACAAAAUAUGGAUGCACUGUGAACAAAAGUGGGUACAAAAGUUGGACU-----------------UUCAUUCUAUCUGCACUCUUUUGCCAUUUGAAGAGUAAACACUUGAGUGAAAGUU
.(((....((.((.((((.........)))).)).))....)))((((-----------------(((((((.......(((((((........)))))))........))))))))))) ( -25.96)
>DroSec_CAF1 14247 113 - 1
ACAAAAUAUAGGUGCACUGCGACCAAAAGUGGGUAAAACAGUUGGUAU-ACCCCA------ACUAUUCAAACUACCUGCACUCCUUCGCCAUUUGAGGAGUAAAUACAUGAGUGAAAGUC
..............((((.((.......(..((((....((((((...-...)))------)))........))))..)(((((((........))))))).......))))))...... ( -25.20)
>DroSim_CAF1 14292 113 - 1
ACAAAAUAUAGGUGCACUGCGACCAAAAGUGGGUACAACAGUUGGUAU-ACCCCA------ACUAUUCAUUCUAUGUGCACUCCUUCGCCAUUUGAGGAGUAAAUACAUGAGUGAAAGUC
...........((((.(..(........)..)))))...((((((...-...)))------))).(((((((.(((((.(((((((........)))))))...)))))))))))).... ( -33.40)
>DroEre_CAF1 14617 98 - 1
ACAAGAUAUAGGUGCACUGAGAGCAAAAGUGGGUGCAAUUAU------GACCCCA------AC--UUGAA-------GCACU-UUUCACCAGUUGGAGAACAAAUACACAAGUGAAAGUG
......(((((.((((((....((....)).)))))).))))------)...(((------((--(((((-------(....-)))))..))))))..........(((........))) ( -19.10)
>DroYak_CAF1 15357 110 - 1
ACAAAAUAUAGAUGCACUGCGAGAAAAAGUGGCUGCAACUAU----AUGCACCCACAUGGGAU--UUCAAUCUG---CCACU-UUGGCCCAUUUGAGGCACAAGUAUAUGAGUGAAAGUU
.....((((((.(((((..(........)..).)))).))))----))...(((....))).(--((((.((..---..(((-(..((((....).)))..))))....)).)))))... ( -28.60)
>consensus
ACAAAAUAUAGGUGCACUGCGACCAAAAGUGGGUACAACAGUUGG_AU_ACCCCA______AC__UUCAAUCUA__UGCACUCUUUCGCCAUUUGAGGAGUAAAUACAUGAGUGAAAGUC
..............((((.........))))...............................................(((((.......(((((.....)))))....)))))...... ( -5.70 =  -6.14 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:46 2006