Locus 4708

Sequence ID 3L_DroMel_CAF1
Location 13,276,539 – 13,276,629
Length 90
Max. P 0.909089
window7423

overview

Window 3

Location 13,276,539 – 13,276,629
Length 90
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 78.25
Mean single sequence MFE -27.93
Consensus MFE -20.45
Energy contribution -21.37
Covariance contribution 0.92
Combinations/Pair 1.14
Mean z-score -1.68
Structure conservation index 0.73
SVM decision value 1.06
SVM RNA-class probability 0.909089
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13276539 90 - 23771897
CGGUGAUGAGGACA-----GCACUGUUGUCGUCAUAGUCUCCUUGUUGGGCCAUUGUCCGGACUCCAAUCCCCGGACUCCUAUCUCCGGACUCCU
..(((((((.((((-----....)))).)))))))(((((....(.((((.....((((((..........)))))).)))).)...)))))... ( -29.90)
>DroSec_CAF1 38526 78 - 1
CGGUGAUGACGACA-----GCACUGUUGUCGUCGUAGUCUCCUUGUUGGGGCAUUGUCCGGACUCCAAUUCCCGGACUCCUAU------------
.((..(((((((((-----((...))))))))))).(((.((.....)))))...((((((..........)))))).))...------------ ( -29.90)
>DroSim_CAF1 39158 78 - 1
CGGUGAUGACGACA-----GCACUGUUGUCGCCAUAGUCUCCUUGUUGGGCCAUUGUCCGGACUCCAAUCCCCGGACUCCUAU------------
.(((.(((.(((((-----((...))))))).))).....((.....)))))...((((((..........))))))......------------ ( -24.60)
>DroEre_CAF1 37063 76 - 1
CGGUGAUGACGACA-----GCACUGUUGUCGUCAUAGUCUCCUUGUUGGGCCAUUGUCCGGACUCCAAGCCCCGGACUCC--------------G
.(((.(((((((((-----((...))))))))))).....((.....)))))...((((((..........))))))...--------------. ( -29.60)
>DroYak_CAF1 40690 90 - 1
CGGUGAUGACGACA-----GCACUGUUGUCGUCAUAGUCUCCUUGUUGGGCCAUUGUCCGGACUCCAAGCCCCGGACUCCUAUCUCCUAUCUCUG
.(((.(((((((((-----((...))))))))))).....((.....)))))...((((((..........)))))).................. ( -29.60)
>DroAna_CAF1 38673 83 - 1
UGGCGAUGACGGCGUCGUGGCGUUGUUCUCCUCUUCGUCUCCUUGUUGGGCCAUUGUCCGGAAUCCGGAAUACAGAAUACGGA------------
((((((.((((((((....)))))))).))..........((.....))))))...(((((...)))))..............------------ ( -24.00)
>consensus
CGGUGAUGACGACA_____GCACUGUUGUCGUCAUAGUCUCCUUGUUGGGCCAUUGUCCGGACUCCAAUCCCCGGACUCCUAU____________
.(((((((((((((.........)))))))))).......((.....)))))...((((((..........)))))).................. (-20.45 = -21.37 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:22 2006