| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,264,241 – 13,264,335 |
| Length | 94 |
| Max. P | 0.983300 |
| Location | 13,264,241 – 13,264,335 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 76.39 |
| Mean single sequence MFE | -16.52 |
| Consensus MFE | -9.80 |
| Energy contribution | -11.28 |
| Covariance contribution | 1.49 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.983300 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13264241 94 - 23771897 CAAAAAUAAGUGCAC-AUCACAACAAUCUUCCAGCUCCAAAUCAUUUGGUAGCUGACUCAC-AUUCCCAUUCC--CCUGGC----CAGGCACUUCAAAAGGA .......((((((..-...............(((((((((.....)))).)))))......-....(((....--..))).----...))))))........ ( -19.30) >DroSec_CAF1 26828 95 - 1 CAAAAAUAAGUGCAC-AUCACAACAAUCUUCCAGCUCCAAAUCCUUUGGCAGCUGACUCAC-UUUCCCACUCC--CCUGGC---CCAGGCACUUCAAAAGGA .......((((((..-...............(((((((((.....)))).))))).....(-(...(((....--..))).---..))))))))........ ( -19.70) >DroSim_CAF1 27059 95 - 1 CAAAAAUAAGUGCAC-AUCACAACAAUCUUCCAGCUCCAAAUCAUUUGGCAGCUGACUCAC-UUUCCCACUCC--CCUGGC---CCAGGCACUUCAAAAGGA .......((((((..-...............(((((((((.....)))).))))).....(-(...(((....--..))).---..))))))))........ ( -19.70) >DroEre_CAF1 26060 94 - 1 CGAAAAUAAGUGCAC-AUCGCAGCAAUCUUCCAGCUCCAAGUCAUUUGGCAGCUGACUCAC-UUUCCCACUCC--GCUGAA----CAGCCACUUCAAACGGA .((((.(.(((((..-...))..........((((((((((...))))).)))))))).).-))))....(((--(.((((----.......))))..)))) ( -17.90) >DroWil_CAF1 38129 87 - 1 CAAAAAUAAAUUCAUAAUUUCCACAAUUUUCA---------CCCUUUC------GACUUCCCUUCAACACUUUUCGUUAGUUAUGUUGGUACUUCAAAAGGA ................................---------.(((((.------((....((..((..(((.......)))..))..))....)).))))). ( -7.50) >DroYak_CAF1 27256 90 - 1 C----AUAAGUGCAC-AUCACAACAAUCUUCCAGCUCCAAAUCAUUUGGCAGCUGACUCAC-CUUCCCAUUCC--GCUGAA----CAAUCACUUCAAAAGGA .----....(((...-..)))..........(((((((((.....)))).)))))......-........(((--..((((----.......))))...))) ( -15.00) >consensus CAAAAAUAAGUGCAC_AUCACAACAAUCUUCCAGCUCCAAAUCAUUUGGCAGCUGACUCAC_UUUCCCACUCC__CCUGGC____CAGGCACUUCAAAAGGA .......((((((..................(((((((((.....)))).))))).....................(((......)))))))))........ ( -9.80 = -11.28 + 1.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:21 2006