| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,256,191 – 13,256,284 |
| Length | 93 |
| Max. P | 0.757976 |
| Location | 13,256,191 – 13,256,284 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 76.13 |
| Mean single sequence MFE | -24.05 |
| Consensus MFE | -12.08 |
| Energy contribution | -12.13 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.757976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13256191 93 - 23771897 --UGGACUCCUCCA---------CGCUUUUCACGCUUU-----UCACAUUGCC--CUGGCAUGUUUUGUGUUUUAUUAGCGUGAAAAUUUUUCAAAGGUGUCAGCACUUUU --((((....))))---------...((((((((((..-----.((((.(((.--...))).....)))).......))))))))))......(((((((....))))))) ( -26.50) >DroVir_CAF1 8235 97 - 1 --UG-GCUGGGUCA---------CGCUUUUCGCGCUAUCUCCCUCAGUUCUGA--CUGGCAUGUUUUGUAUUUUAUUAGCGUGAAAAUGUUUCAAAGGUGUCAGCAGUUUG --..-(((((..((---------((((((((((((((.......((((....)--)))(((.....))).......))))))))))).)).......))))))))...... ( -24.81) >DroGri_CAF1 8402 92 - 1 --UG-GUUGG-CUA---------CGCUUUUCACGCUUUC----UCAGCUCUGA--CUGGCAUGUUUUGUAUUUUAUAAGCGUGAAAAUUUUUCAAAGGUGUCAGCAGUUUU --..-(((((-(.(---------(.((((((((((((..----.(((......--)))(((.....))).......)))))))).........))))))))))))...... ( -21.70) >DroWil_CAF1 27007 83 - 1 -AGGGA--------------------CUUUCACGCUUU-----UCACAUUGCU--GUGGCAUGUUUUGUGUUUUAUUAGCGUGAAAAUUUUUCAAAGGUGUCAGCAGUUUU -.(..(--------------------.(((((((((..-----.((((..((.--.......))..)))).......)))))))))...)..)((((.((....)).)))) ( -19.70) >DroMoj_CAF1 12826 97 - 1 --UG-GUUGGGCCA---------CGACUCUCAUGCUAUCUCGCUCAGCUGUGA--CUGGCAUGUUUUGUGUUUUAUUAGCGUGAAAAUUUUUCAAAGGUGUCAGCAGUUUA --..-((((((((.---------.......(((((((..((((......))))--.)))))))(((..((((.....))))..)))..........))).)))))...... ( -24.70) >DroPer_CAF1 20888 106 - 1 CUGGGACUCCUCCAUGCUUUUCACGCUUUUCACGCUUU-----UCACAUUGCUCUCUGGCAUGUUUUGUGUUUUAUUAGCGUGAAAAUUUUUCAAAGGUGUCAGCACUUUU ...(((....)))....((((((((((....((((...-----..((((.(((....)))))))...))))......))))))))))......(((((((....))))))) ( -26.90) >consensus __UG_ACUGG_CCA_________CGCUUUUCACGCUUU_____UCACAUUGCA__CUGGCAUGUUUUGUGUUUUAUUAGCGUGAAAAUUUUUCAAAGGUGUCAGCAGUUUU ...........................(((((((((........(((........)))(((.....)))........)))))))))......................... (-12.08 = -12.13 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:20 2006