Locus 4701

Sequence ID 3L_DroMel_CAF1
Location 13,249,892 – 13,250,012
Length 120
Max. P 0.665152
window7413

overview

Window 3

Location 13,249,892 – 13,250,012
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.83
Mean single sequence MFE -30.85
Consensus MFE -16.85
Energy contribution -16.72
Covariance contribution -0.13
Combinations/Pair 1.43
Mean z-score -2.02
Structure conservation index 0.55
SVM decision value 0.28
SVM RNA-class probability 0.665152
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13249892 120 + 23771897
CAUCGACUCAUCCAUGCAGUUCUAUGCGCAGCUCACUUUCCUUGAUCUGUCAUUCAAUGACAUGCUCACCAUACCGGAACGAUCGUUUGCGUAUCACGCCAAAUUGCAGGAGCUGCAUCU
.............((((((((((.(((................((((((((((...))))))......((.....))...))))(((((((.....)).))))).))))))))))))).. ( -30.40)
>DroVir_CAF1 219 120 + 1
CAUCGACUCAUCGAUGCAGUUCUAUUCACAGCUGCAAUUCCUUGAUUUAUCCUACAAUGAUAUGGUUACGAUACCGGAACGCUCGUUCGCCUACCAUGCCAAGCUGCUGGAGCUGCAUCU
............((((((((((((....((((((((...........((((.......))))((((..((....))((((....))))....)))))))..))))).)))))))))))). ( -34.10)
>DroGri_CAF1 207 120 + 1
CAUUGACUCAUCGAUGCAGUUUUAUUCGCAACUGACAUUCCUUGAUCUGUCCUACAAUGAUAUGGUCACGAUACCGGAACGUUCCUUCCUGUAUCAUGCCAAACUGCUCGAGCUGCAUCU
............((((((((((.....(((..((.(((....(((((((((.......)))).))))).(((((.((((......)))).)))))))).))...)))..)))))))))). ( -32.30)
>DroWil_CAF1 16358 120 + 1
CAUCGAUUCAUCGAUGCAGUUCUAUGCCCAGCUAACGAUUCUUGAUUUAUCCUUUAACGAAAUGAUUAACAUACCGGAACGCUCAUUUGCCUAUCAUUCGAAACUGCAAGAGCUACACUU
((((((....)))))).((((((.(((....(....)....................((((.((((...((.....((....))...))...)))))))).....)))))))))...... ( -19.00)
>DroMoj_CAF1 213 120 + 1
CAUCGACUCAUCGAUGCAGUUCUAUUCGCAGCUGACAUUCCUUGAUUUGUCCUACAAUGACAUGGUCACGAUACCAGAGCGCUCAUUCGCCUACCAUGCCAAGCUCCAGGAGCUGCAUCU
............(((((((((((....(.((((((((..........))))......((.((((((.........((.(((......))))))))))).)))))).).))))))))))). ( -32.60)
>DroAna_CAF1 4704 120 + 1
AAUCGACUCGUCGAUGCAGUUCUACACACAGCUCACUUUCCUGGAGCUGUCCUUCAACGACAUGGUCACCAUCCCGGAGCUCUCCUUCAAGUACCACGCCAAGUUGCAGGAGCUGCACCU
.(((((....)))))((((((((....(((((((.(......)))))))).......((((.((((.........(((....))).....(.....))))).))))..)))))))).... ( -36.70)
>consensus
CAUCGACUCAUCGAUGCAGUUCUAUUCGCAGCUGACAUUCCUUGAUCUGUCCUACAAUGACAUGGUCACCAUACCGGAACGCUCAUUCGCCUACCAUGCCAAACUGCAGGAGCUGCAUCU
............(((((((((((...................(((((((((.......)))).)))))........(((......)))....................))))))))))). (-16.85 = -16.72 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:12 2006