| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,244,781 – 13,244,885 |
| Length | 104 |
| Max. P | 0.985156 |
| Location | 13,244,781 – 13,244,885 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 77.24 |
| Mean single sequence MFE | -15.24 |
| Consensus MFE | -14.40 |
| Energy contribution | -13.63 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.23 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.95 |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.985156 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13244781 104 + 23771897 AUUUAUUAAACAAUAUUUCGUUAGGUAAUCGAUAGCAUAUUCAUCUUUCCUGGGGGAAAUAUGUUUGAAAAGUGAGCUUAAUUAAAACACUCAUAUCCUAAACA ....................(((((...((((..(((((((..((((....))))..)))))))))))...(((((.............)))))..)))))... ( -16.12) >DroSec_CAF1 7656 82 + 1 AUUUAUUAAACAAUAUUUUGCUAGGCAAUCGAUAGCAUAUUCACCUUUCCUGGGGGAUAUUUGUUUGAAAAGUG-----AAUUAAAA----------------- ((((.((((((((.....(((((.........)))))(((((.(((.....)))))))).)))))))).)))).-----........----------------- ( -16.00) >DroSim_CAF1 8155 82 + 1 AUUUAUUAAACAAUAUUUUGCUGGGCAAUCGAUAGCAUUUUCACCUUUCCUGGGAGAUAUUUGUUUGAAAAAUU-----AAUUAAAA----------------- ((((.((((((((((((((((((..(....).)))).......((......)))))))).)))))))).)))).-----........----------------- ( -13.60) >consensus AUUUAUUAAACAAUAUUUUGCUAGGCAAUCGAUAGCAUAUUCACCUUUCCUGGGGGAUAUUUGUUUGAAAAGUG_____AAUUAAAA_________________ ((((.((((((((...(((.(((((.....((........))......))))).)))...)))))))).))))............................... (-14.40 = -13.63 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:05 2006