Locus 4697

Sequence ID 3L_DroMel_CAF1
Location 13,244,592 – 13,244,709
Length 117
Max. P 0.581931
window7404

overview

Window 4

Location 13,244,592 – 13,244,709
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 82.99
Mean single sequence MFE -24.70
Consensus MFE -14.11
Energy contribution -14.16
Covariance contribution 0.05
Combinations/Pair 1.19
Mean z-score -2.05
Structure conservation index 0.57
SVM decision value 0.10
SVM RNA-class probability 0.581931
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13244592 117 - 23771897
UGUACUCUACUUUCUAAAUUUCCAAAACUGCCUGAUGGUCACUCCCACACAUCCAGGGGAAUCCCCCACUUGGCAUUCUCCGGAUGUAAUCCAUUGCAGGUUCAACACCCCCAAAAU
.............................(((((.(((......))).((((((.(((((((.((......)).))))))))))))).........)))))................ ( -26.90)
>DroSec_CAF1 7459 116 - 1
UGUACUCUACUUUGUAAAUUUCCAAAACUGUCUGGUGGUCACUUCCACACCUCCAGGGGAUUCCCCCACUUGGCAUUCUCCGGAUGUAAUCCAUUGCAGGUUCAACACCC-CGAAAU
..(((........))).(((((............((((......))))((((.((((((....)))).....(((((.....))))).......)).)))).........-.))))) ( -23.20)
>DroSim_CAF1 7958 116 - 1
UUUACUCUACUUUCUAAAUUUCCAAAACUGUCUGGUGGUCACUUCCACACCUCCAGGGGAUUCCCCCACUUGGCAUUCUCCGGAUGUAAUCCAUUGCAGGUUCAACACCC-CGAAAU
.................(((((............((((......))))((((.((((((....)))).....(((((.....))))).......)).)))).........-.))))) ( -22.80)
>DroEre_CAF1 6999 96 - 1
UGUACUCUACUUUCUGAGCUUCCAAAAAGGUCCUGUGGUCACGGCCACACCUCCUGGGGCUGCCCCCACUUU--------------------UUUGCAGGUUCAACACCC-CGAAAU
..............(((((((.(((((((((..((((((....))))))......((((....)))))))))--------------------)))).)))))))......-...... ( -30.60)
>DroYak_CAF1 7618 116 - 1
UGUACUCCACUUUCUAAAUUUACAAAAAUGUCUUGUGGUCACUGCCACACCUCCAGGGAAUCCCCCCACUUGGCAUUCUCCGAAUGUAAUCCAUUGCAAGUUCAACACCC-CGAAAU
..........((((............((((((.((((((....))))))......(((......)))....))))))....((((((((....)))))..))).......-.)))). ( -20.00)
>consensus
UGUACUCUACUUUCUAAAUUUCCAAAACUGUCUGGUGGUCACUGCCACACCUCCAGGGGAUUCCCCCACUUGGCAUUCUCCGGAUGUAAUCCAUUGCAGGUUCAACACCC_CGAAAU
................(((((.(((.........((((......)))).......((((....)))).....(((((.....)))))......))).)))))............... (-14.11 = -14.16 +   0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:04 2006