| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,234,577 – 13,234,683 |
| Length | 106 |
| Max. P | 0.841372 |
| Location | 13,234,577 – 13,234,683 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.91 |
| Mean single sequence MFE | -23.20 |
| Consensus MFE | -12.51 |
| Energy contribution | -12.83 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841372 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13234577 106 + 23771897 ---------ACUUCCGAGCUAAGCUGAUUUACUAACUUUUGCAAAU-UUUAAGCAUAUGCAAAAG----ACCUAAGAUACAUUCAACCGCAAAAGAUGCAAAUUAGCAAUGCUGUUUGGC ---------....((((((...((((((((.(...(((((((....-.....((....)).....----......((.....))....)))))))..).))))))))......)))))). ( -23.40) >DroSec_CAF1 27954 111 + 1 CUAA---AAAACUCCGAGCUAAGCUGAUUUACUAACUUUUGCAAAU-UUUAAGCAUAUGCAA-AG----ACCUAAGAUACAUUCAAACGCAAAAGAUGCAAAUCAGCAAUGCUGUUUGGC ....---......((((((...((((((((.(...(((((((....-.....((....))..-..----......((.....))....)))))))..).))))))))......)))))). ( -25.60) >DroSim_CAF1 32915 111 + 1 CUAA---AAACUACCAAGCUAAGCUGAUUUACUACCUUUUGCUAAU-UUUAAGAAUAUGCAA-AG----ACCUAAGAUACAUUCAAACGCAAAAGAUGCAAAUUAGCAAUGCUGUUUGGC ....---......((((((...((((((((.(...(((((((....-.....(......)..-..----......((.....))....)))))))..).))))))))......)))))). ( -19.90) >DroEre_CAF1 17434 98 + 1 AUUUGCUAAGCU-GCGAGGUAAGCUGAUUUAUUUAUUUUUGCAAAGUUUUAAGC----------------CAUGAG----AUUCAGCC-AAAAAGAUGCAAAUUAGCAGUGUUGUUUGGC ....(((((((.-(((......((((((((.....(((((((..(((((((...----------------..))))----)))..).)-))))).....))))))))..))).))))))) ( -21.90) >DroYak_CAF1 28049 118 + 1 AUAACUUAAGCUUCCGAAGCAAGCUGAUUUCUUAACUUUUGCUAAUGUUUAAGAUUAUGCAA-AGGUGAACUUGAGAAACAUUCAACCGAAAAAGAUGCAAAUUAGCAAUGUU-UUUGGC ....((((((.(((.(((((.....).))))...((((((((((((.......)))).))))-)))))))))))))..........(((((((...(((......)))...))-))))). ( -25.20) >consensus AUAA___AAACUUCCGAGCUAAGCUGAUUUACUAACUUUUGCAAAU_UUUAAGCAUAUGCAA_AG____ACCUAAGAUACAUUCAACCGCAAAAGAUGCAAAUUAGCAAUGCUGUUUGGC .............((((((...((((((((.(...(((((((..............................................)))))))..).))))))))......)))))). (-12.51 = -12.83 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:54 2006