Locus 4691

Sequence ID 3L_DroMel_CAF1
Location 13,230,283 – 13,230,373
Length 90
Max. P 0.566784
window7391

overview

Window 1

Location 13,230,283 – 13,230,373
Length 90
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 93.74
Mean single sequence MFE -27.41
Consensus MFE -24.70
Energy contribution -24.51
Covariance contribution -0.19
Combinations/Pair 1.09
Mean z-score -1.41
Structure conservation index 0.90
SVM decision value 0.07
SVM RNA-class probability 0.566784
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13230283 90 - 23771897
AGUCGAAAGAUGAGCAGCGCAAGCCUUGGCCAAUGAUUGGCAGCAGAAA-GAGUCGGCUAUAGCGGUGUGACAGAGAGGGGAAAACGCCGC
((((((.......((.((....))....((((.....)))).)).....-...))))))...(((((((...............))))))) ( -27.82)
>DroSec_CAF1 23683 90 - 1
AGUCGAAAGAUGAGCAGCGCAAGCCUCGGCCAAUGAUUGGCAGCAGAAA-AGGUUGGCUAUAGCGGUGUGACAGAGAGGGGAAAACGCCGC
.(((....)))(((..((....)))))(((((((..((..(....)..)-).)))))))...(((((((...............))))))) ( -28.66)
>DroSim_CAF1 28601 91 - 1
AGUCGAAAGAUGAGCAGCGCAAGCCUCGGCCAAUGAUUGGCAGCAGAAAGAGGUUGGCUAUAGCGGUGUGACAGAGAGGGGAGAACGCCGC
.(((....))).......((.((((((.((((.....))))........)))))).))....(((((((...............))))))) ( -28.76)
>DroEre_CAF1 13181 90 - 1
AGUCGAAAGAUGAGCAGCCGAAGCCUCGGCCAAUGAUUGGCAGCAGAAA-GAGUCGGCUAUAGCGCUGUGAGAGAGAGGGGAGAACGCCGC
.(((....)))..((((((..((((...((((.....))))....((..-...))))))...).)))))........((.(....).)).. ( -24.40)
>consensus
AGUCGAAAGAUGAGCAGCGCAAGCCUCGGCCAAUGAUUGGCAGCAGAAA_AAGUCGGCUAUAGCGGUGUGACAGAGAGGGGAAAACGCCGC
((((((....((((..((....))))))((((.....))))............))))))...(((((((...............))))))) (-24.70 = -24.51 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:52 2006