| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,341,494 – 1,341,608 |
| Length | 114 |
| Max. P | 0.595295 |
| Location | 1,341,494 – 1,341,608 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.46 |
| Mean single sequence MFE | -39.28 |
| Consensus MFE | -29.78 |
| Energy contribution | -29.30 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.595295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1341494 114 + 23771897 CCUGCAGACAAUGGCGGCCGCCAAAUCACACCUUGCUCCUGCUGCCCCUCCU---CCGCCCUCUGUCAUCUUGGCAAACAAAGUCUUCGGCAGGGUCGAGGUAUAAGAUGUAGGGAU--- ((((((.....((((....))))......((((((..(((((((........---..(((............)))............)))))))..))))))......))))))...--- ( -36.25) >DroSec_CAF1 13684 111 + 1 CCUGCAGACAAUGGCAGCCGCCAAAUCACACCUUGCUCC---------UGCUGCCCCUCCUCCUGUCAUCUUGGCAAACAAAGUCUUCGGCAGGGUCGAGGUACAAGAUGUAGGGAUGAU ((((((.....((((....))))......((((((..((---------(((((...((.....((((.....)))).....))....)))))))..))))))......))))))...... ( -37.10) >DroSim_CAF1 13728 120 + 1 CCUGCAGACAAUGGCGGCCGCCAAAUCACACCUUGCUCCUGCUGCUCCUGCUGCCCCUCCUCCUGUCAUCUGGGCAAACAAAGUCUUCGGCAGGGUCGAGGUACAAGAUGUAGGGAUGAU ((((((.....((((....))))......((((((..((((((((....))(((((...............)))))............))))))..))))))......))))))...... ( -41.66) >DroEre_CAF1 14046 108 + 1 CCUGCAGACAAUGGCGGCCGCCAAAUCACACCUUGCUCC---------UGGUGCCCCUCCUCCUGUCAUCUUGGCAAACAAAGUCUUCGGCAGGGGCGGGGGAUAAAAUGCAGGGAU--- ((((((.....((((....)))).....((((.......---------.))))(((((.((((((((.....(((.......)))...)))))))).)))))......))))))...--- ( -44.90) >DroYak_CAF1 14772 108 + 1 CCUGCAGACAAUGGCGGCCGCCAAAUCACACCUUGCUCC---------UGAUGCCCCUCCUCCUGUCAUCUUGGCAAACAAAGUCUUCGGCAGGGUCGAGGGAUAAGAUGCAGGGAU--- (((((......((((....)))).(((.......((...---------....))(((((.(((((((.....(((.......)))...)))))))..)))))....))))))))...--- ( -36.50) >consensus CCUGCAGACAAUGGCGGCCGCCAAAUCACACCUUGCUCC_________UGCUGCCCCUCCUCCUGUCAUCUUGGCAAACAAAGUCUUCGGCAGGGUCGAGGUAUAAGAUGUAGGGAU___ ((((((.....((((....))))................................((((.(((((((.....(((.......)))...)))))))..)))).......))))))...... (-29.78 = -29.30 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:43 2006