Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,228,166 – 13,228,264 |
Length | 98 |
Max. P | 0.909353 |
Location | 13,228,166 – 13,228,264 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.82 |
Mean single sequence MFE | -22.11 |
Consensus MFE | -16.82 |
Energy contribution | -17.70 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.04 |
Mean z-score | -2.20 |
Structure conservation index | 0.76 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.909353 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13228166 98 + 23771897 CACUGUUAAUUGUCAAAGAGUUUCGACUUUGCUGGUCUAACUUUU-UUCC--CUCAUUCGGCUUUCUUUUGGCCAAGUUGGCUAAUUGCCGUAUUAACCUU ....((((((....((((((((..((((.....)))).)))))))-)...--......((((......((((((.....))))))..)))).))))))... ( -23.70) >DroSec_CAF1 21533 100 + 1 CACUGUUAAUUGUCAGAGAGUUUCGACUUUCCUGAGCUGGCUUUU-UUCUCUCUCACUCGGCUUUCUUUUGGCCAAGUUGGCUAAUUGCCGUAUUAACCUU ....((((((.((.((((((..........((......)).....-..)))))).)).((((......((((((.....))))))..)))).))))))... ( -24.33) >DroSim_CAF1 26490 98 + 1 CACUGUUAAUUGUCAGAGAGUUUCGACUUUCCUGAGCUGCCUUUU-UUCU--CUCACUCGGCUUUCUUUUGGCCAAGUUGGCUAAUUGCCGUAUUAACCUU ....((((((..(((((((((....))))).))))..........-....--......((((......((((((.....))))))..)))).))))))... ( -22.30) >DroEre_CAF1 11124 98 + 1 CACUGUUAAUUGUCAGAGAGUUUCGACUUUCCUGAGCUGCCUUUU-UUCC--CCCAUUCGGCUUUCUUUUGGCCAAGUUGGCUAAUUGCCAUAUUAACCUU ....((((((..(((((((((....))))).))))..........-....--.......(((......((((((.....))))))..)))..))))))... ( -21.20) >DroYak_CAF1 21552 93 + 1 CCCUGUUAAUUGUCAGAGAGUUUCGAGUUUC------UGCCUUUUUUUUC--CCUAUUCGGCUUUCUUUUGGCCAAGUUGGCUAAUUGCCAUAUUAACCUU ....((((((.(.((((((.(....).))))------)).).........--.......(((......((((((.....))))))..)))..))))))... ( -19.00) >consensus CACUGUUAAUUGUCAGAGAGUUUCGACUUUCCUGAGCUGCCUUUU_UUCC__CUCAUUCGGCUUUCUUUUGGCCAAGUUGGCUAAUUGCCGUAUUAACCUU ....((((((..(((((((((....)))))).)))........................(((......((((((.....))))))..)))..))))))... (-16.82 = -17.70 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:47 2006