Locus 4687

Sequence ID 3L_DroMel_CAF1
Location 13,225,989 – 13,226,095
Length 106
Max. P 0.576999
window7385

overview

Window 5

Location 13,225,989 – 13,226,095
Length 106
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 86.26
Mean single sequence MFE -30.42
Consensus MFE -16.32
Energy contribution -16.80
Covariance contribution 0.48
Combinations/Pair 1.07
Mean z-score -3.09
Structure conservation index 0.54
SVM decision value 0.09
SVM RNA-class probability 0.576999
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13225989 106 + 23771897
GAGGCAGAAAUUUAAGCAACAAAA-UCGUGGCUUUUUUUUUUUUUUGCUUUACUCACAUUGUUUAUGAUGACAAUUUGGCGUUGUUGUUGU--CGUCGACAUGUGGCCA
((((((((((...((((.((....-..)).)))).......))))))))))..((((((.(((.((((..(((((........)))))..)--))).)))))))))... ( -31.20)
>DroSec_CAF1 19388 102 + 1
GAGGCAGAAAUUUAAGCAACAAAA-UCGUGGCUUUUU----UUUUUGCUUUACUCACAUUGUUUAUGAUGACAAUUUGGCGUUGUUGUUGU--CGUCGACAUGUGGCCA
((((((((((...((((.((....-..)).))))...----))))))))))..((((((.(((.((((..(((((........)))))..)--))).)))))))))... ( -33.70)
>DroSim_CAF1 24364 102 + 1
GAGGCAGAAAUUUAAGCAACAAAA-UCGUUGCUUUUU----UUUCUGCUUUACUCACAUUGUUUAUGAUGACAAUUUGGCGUUGUUGUUGU--CGUCGACAUGUGGCCA
((((((((((...(((((((....-..)))))))...----))))))))))..((((((.(((.((((..(((((........)))))..)--))).)))))))))... ( -40.40)
>DroEre_CAF1 9082 98 + 1
GAGACAGAAAUUUAAGCAACAAAU-UCGUGGCUUU--------UUUGCUUUACUCACAUUGUUUAUGAUGACAAUUUGUCGUUGUUGUUGU--CGUCGACAUGUGGCCA
(((.((((((....(((.((....-..)).)))))--------)))))))...((((((.(((.((((..(((((........)))))..)--))).)))))))))... ( -25.20)
>DroAna_CAF1 106615 99 + 1
GAGGCAGAAUUUUAAGCAACAAAAUUCGUUGAUUUUU----UUCCC------CCCUCACUGUUUAUGAUGACAAUUCUGUGUUGUUGCUGUGCUGUCGGCAUGUGGCCA
..(((((.......((((((((........((.....----.))..------....(((((((......)))).....)))))))))))...)))))(((.....))). ( -21.60)
>consensus
GAGGCAGAAAUUUAAGCAACAAAA_UCGUGGCUUUUU____UUUUUGCUUUACUCACAUUGUUUAUGAUGACAAUUUGGCGUUGUUGUUGU__CGUCGACAUGUGGCCA
..(((........((((.((.......)).))))....................((((.((((.(((((((((((........))))))))..))).))))))))))). (-16.32 = -16.80 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:46 2006