Locus 4686

Sequence ID 3L_DroMel_CAF1
Location 13,224,386 – 13,224,485
Length 99
Max. P 0.950993
window7384

overview

Window 4

Location 13,224,386 – 13,224,485
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 88.51
Mean single sequence MFE -25.51
Consensus MFE -19.98
Energy contribution -21.72
Covariance contribution 1.74
Combinations/Pair 1.04
Mean z-score -2.24
Structure conservation index 0.78
SVM decision value 1.41
SVM RNA-class probability 0.950993
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13224386 99 - 23771897
AACAUUUUGACACACUUAAGUGUCGGACAGCCCCCAUCAUCAGCGGAUCGCAUCCCAAACGAUCCGAUCCGAUGCGAUCCUCAGCCAGUUCGAAGUGAA
..(((((((((((......)))))((((.((...........))((((((((((................)))))))))).......)))))))))).. ( -30.49)
>DroSec_CAF1 17791 99 - 1
AACAUUUUGACACACUUAAGUGUCGGACAGCCCCCAUCAUCAACGGAUCGCAUCCCAAACGAUCCGAUCCGAUGCGAUCCUCAGCCAGCUCGAAGUGAA
..(((((((((((......)))))((.......)).........((((((((((................))))))))))...........)))))).. ( -26.99)
>DroSim_CAF1 22796 99 - 1
AACAUUUUGACACACUUAAGUGUCGGACAGCCCCCAUCAUCAGCGGAUCGCAUCCCAAACGAUCCGAUCCGAUGCGAUCCUCAGCCAGCUCGAAGUGAA
..(((((((((((......)))))((.(.((...........))((((((((((................))))))))))...))).....)))))).. ( -28.39)
>DroEre_CAF1 7490 84 - 1
AACAUUUUGACACACUUAAGUGUCGGACAGCCCCCAUCAUCAGCGGAUC-----CCAA-----CCGAUCCGAUGCGAUCCUCAGUCAGCUCGAG-----
.....((((((((......))))))))............((((((((((-----....-----..)))))(((..(.....).))).))).)).----- ( -20.10)
>DroYak_CAF1 17781 84 - 1
AACAUUUUGACACACUUAAGUGUCGGACAGCCCCCAUCAUCAGCGGAUC-----CCAA-----CCGAUCCGAUGCGAUCCUCAGUCCGCUCGAA-----
........(((((......)))))((((.......(((..((.((((((-----....-----..)))))).)).))).....)))).......----- ( -21.60)
>consensus
AACAUUUUGACACACUUAAGUGUCGGACAGCCCCCAUCAUCAGCGGAUCGCAUCCCAAACGAUCCGAUCCGAUGCGAUCCUCAGCCAGCUCGAAGUGAA
..(((((((((((......)))))(((..((............(((((((.(((......))).)))))))..))..)))...........)))))).. (-19.98 = -21.72 +   1.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:45 2006