Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,223,474 – 13,223,575 |
Length | 101 |
Max. P | 0.753148 |
Location | 13,223,474 – 13,223,575 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 83.98 |
Mean single sequence MFE | -31.55 |
Consensus MFE | -27.69 |
Energy contribution | -27.50 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.60 |
Structure conservation index | 0.88 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753148 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13223474 101 - 23771897 ----------U---AAUACACAUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGAUGUUGAUUU-CAAUUUGUCA ----------.---.....((((((...((((((((.......)))))(((.(((((.......))))))))................))).))))))((((..-......)))) ( -29.00) >DroSec_CAF1 16870 110 - 1 AACAAAAAAAG---AAUA-ACAUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGAUGUUGACUU-AUGAUUGUCA ...........---...(-((((((...((((((((.......)))))(((.(((((.......))))))))................))).)))))))(((..-......))). ( -32.30) >DroYak_CAF1 16800 114 - 1 GACAAAAAAAUAUUAAUACAUCUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGACGCUGAUUC-UUGCGUGUCA ((((....................(((.((((((((.......)))))(((.(((((.......))))))))................))).)))(((......-..))))))). ( -34.90) >DroAna_CAF1 104353 107 - 1 ---AAAAAAAU---CAU--CCAUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGAUGUUGAUUCCAUGCCAGUCC ---.....(((---((.--.(((((...((((((((.......)))))(((.(((((.......))))))))................))).))))).)))))............ ( -30.00) >consensus ___AAAAAAAU___AAUA_ACAUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGAUGUUGAUUC_AUGCUUGUCA ........................(((.((((((((.......)))))(((.(((((.......))))))))................))).)))....(((.........))). (-27.69 = -27.50 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:40 2006