Locus 4679

Sequence ID 3L_DroMel_CAF1
Location 13,221,214 – 13,221,320
Length 106
Max. P 0.577506
window7370

overview

Window 0

Location 13,221,214 – 13,221,320
Length 106
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 71.39
Mean single sequence MFE -34.06
Consensus MFE -18.39
Energy contribution -18.95
Covariance contribution 0.56
Combinations/Pair 1.48
Mean z-score -1.44
Structure conservation index 0.54
SVM decision value 0.09
SVM RNA-class probability 0.577506
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13221214 106 + 23771897
--CUCCCGUGGCUCAUUGAUCCACACAGGUCGACGGGUA------AAUUU-CUCGGAUUGGGUUCUCUUCUCUGCGAGCCAGUGGACCCGAUCU--CCA-UCCUCGUCCAACUCG--GUC
--...((((((.((...)).))))...((.(((((((..------.....-))))((((((((((.((.(((...)))..)).)))))))))).--...-...))).)).....)--).. ( -33.60)
>DroSec_CAF1 14619 106 + 1
--CUCCCCUGGCACAUUUAUCCACACAGGUCGAUGGGUA------AAUUU-CUCGGAUUGGGUUCUCUUCUCCGCGAGCCAGUGGACCCGAUCC--CCA-UUCUCGUCCAACUCG--GUC
--......(((.((((((((((((.......).))))))------)))..-...(((((((((((.((.(((...)))..)).)))))))))))--...-.....))))).....--... ( -30.80)
>DroSim_CAF1 19724 106 + 1
--CUCCCCUGGCACAUUGAUCCACACAGGUCGAUGGGUA------AAUUU-CUCGGAUUGGGUUCUCUUCUCCGCGAGCCAGUGGACCCGAUCC--CCA-UCCUCGUCCAACUCG--GUC
--....((.((..((((((((......))))))))((..------.....-...(((((((((((.((.(((...)))..)).)))))))))))--...-.......))..)).)--).. ( -31.85)
>DroEre_CAF1 4439 106 + 1
--CUCCUCCGGCAGAUUGAUCCACACUGGUCGAUGGGUG------AAUUC-CUCGGAGCGGGAAGCCUUCUCCGCGAACCAGUGGAUCCGUUCC--ACA-UCCUCGCCCCACAUU--GUC
--.......((((((((((((......)))))))(((((------(....-(.(((((.(((...))).))))).).....(((((.....)))--)).-...))))))....))--))) ( -35.20)
>DroYak_CAF1 14513 106 + 1
--CUCAUGCGGCACAUUGACCCAACCUGGUCGAUGGGUG------ACGUU-CUCGGAAUGGGUUUGCUUCUCCGCGAACCAGUGCACCCGCUCC--CCA-UCCUCGACCACCAUU--GGA
--..................((((..(((((((.(((((------.((((-(...)))))(((((((......)))))))((((....))))..--.))-))))))))))...))--)). ( -35.20)
>DroAna_CAF1 102357 119 + 1
CCCGGCUCUAAGGUGUUGGUCCAAUCGGGCCGACGAGUCUUCCGAGCUUUACUCG-UUUUCGUAUUCCGCUUGGACAUCCAGUGAACCCGCUCGAACGACUCUCCGUCAAACUCAUCGUC
...(((........((((((((....))))))))(((((.(((((((..(((...-.....)))....)))))))..((.((((....)))).))..)))))...)))............ ( -37.70)
>consensus
__CUCCCCUGGCACAUUGAUCCACACAGGUCGAUGGGUA______AAUUU_CUCGGAUUGGGUUCUCUUCUCCGCGAGCCAGUGGACCCGAUCC__CCA_UCCUCGUCCAACUCG__GUC
..........((.((((((((......)))))))).))................((((((((........(((((......))))))))))))).......................... (-18.39 = -18.95 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:33 2006