Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,219,256 – 13,219,357 |
Length | 101 |
Max. P | 0.785170 |
Location | 13,219,256 – 13,219,357 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 86.20 |
Mean single sequence MFE | -34.00 |
Consensus MFE | -23.60 |
Energy contribution | -24.35 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.00 |
Structure conservation index | 0.69 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.785170 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13219256 101 + 23771897 AACAAUGGCAAUGGCAGUCCUGGCAGCUUGUUAUUGAAAAUCCACCAAGGGGUUAAGGUGGCUUCGGUGGGUGGAUUUCAAUGGGCGGCGAUGGGUUGCGG .............(((..(((.((.(((...((((((((.((((((..((((((.....))))))....))))))))))))))))).)).).))..))).. ( -37.30) >DroSec_CAF1 12591 97 + 1 AACAAUGGCAAUGGCAACCCUGGCAGCUUGUUAUUGAAAAUCCACCAAGGGGUUAAGGUGGCUUCGGUGGGUGGAUUUCGAUGGG----GGCGGGUUGCGG .............(((((((.....((((.(((((((((.((((((..((((((.....))))))....))))))))))))))))----)))))))))).. ( -36.90) >DroSim_CAF1 17690 97 + 1 AACAAUGGCAAUGGCAACCCUGGCAGCUUGUUAUUGAAAAUCCACCAAGGGGUUAAGGUGGCUUCGGUGGGUGGAUUUCGAUGGG----GGCGGGUUGCGG .............(((((((.....((((.(((((((((.((((((..((((((.....))))))....))))))))))))))))----)))))))))).. ( -36.90) >DroEre_CAF1 2528 89 + 1 AACAAUGGCAAUGGCAACCCUGGCAGCUUGUUAUUGGAAAUCCACCAAGGGGUUAAGGUGGCUUCAGUGGGCGCACUU-GAGA-----------GGGGGCG ..(((((((((((.((....)).))..)))))))))....(((((...((((((.....)))))).)))))(((.(((-....-----------))).))) ( -24.90) >consensus AACAAUGGCAAUGGCAACCCUGGCAGCUUGUUAUUGAAAAUCCACCAAGGGGUUAAGGUGGCUUCGGUGGGUGGAUUUCGAUGGG____GGCGGGUUGCGG ..(((((((((((.((....)).))..))))))))).(((((((((..((((((.....))))))....)))))))))....................... (-23.60 = -24.35 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:30 2006