| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,214,487 – 13,214,637 |
| Length | 150 |
| Max. P | 0.709157 |
| Location | 13,214,487 – 13,214,598 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 86.01 |
| Mean single sequence MFE | -31.35 |
| Consensus MFE | -21.08 |
| Energy contribution | -24.07 |
| Covariance contribution | 3.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.709157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13214487 111 + 23771897 GACAUAUCAGAAAUGUGUCAUCAGCAAUGAAGAUGGACUGACCUCACCACUGUUCAGUUGGCCAAAAAGG-GGGUGUAGAUGGGCAUGUAGGGCUAGGGAGCCAUAAAAGUU (((((((.....))))))).(((....)))..((((.((..(((..((((((((((....(((.......-.))).....)))))).)).))...))).))))))....... ( -28.50) >DroSec_CAF1 7822 112 + 1 GACAUAUCAAAAAUGUGUCAUCAGCAAUGAAGAUGGACUGACCCCACCACUGGCCAGUUGGCCAAAAAGGGGGGUGUAGUUGGGUAUGUAGGACCAGGGAGCCAUAAAAGUU .(((((((........(((.(((....))).))).((((((((((.((..(((((....)))))....))))))).))))).))))))).((.(....)..))......... ( -37.00) >DroSim_CAF1 12898 112 + 1 GACAUAUCAAAAAUGUGUCAUCAGCAAUGAAGAUGGACUGACCCCACCACUGGCCAGUUGGCCAAAAAGGGGGGUGUAGUUGGGUAUGUAGGACCAGGGAGUCAUAAAAGUU .(((((((........(((.(((....))).))).((((((((((.((..(((((....)))))....))))))).))))).)))))))..(((......)))......... ( -38.00) >DroYak_CAF1 7753 97 + 1 GACAUAUCACAAAUGUGUCAUCAGCAACGAAGACGGACUGACC--AUCACU------------A-AAGAGGGGGUGUAGUUGGGUAUAUAGGGCUAGGGAGCCAUAAAAGUU (((((((.....)))))))......(((.....(.((((((((--.((...------------.-..))...))).))))).)........((((....))))......))) ( -21.90) >consensus GACAUAUCAAAAAUGUGUCAUCAGCAAUGAAGAUGGACUGACCCCACCACUGGCCAGUUGGCCAAAAAGGGGGGUGUAGUUGGGUAUGUAGGACCAGGGAGCCAUAAAAGUU .(((((((........(((.(((....))).))).((((((((((.((..(((((....)))))....))))))).))))).)))))))..(((......)))......... (-21.08 = -24.07 + 3.00)
| Location | 13,214,527 – 13,214,637 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 85.54 |
| Mean single sequence MFE | -29.80 |
| Consensus MFE | -22.81 |
| Energy contribution | -23.88 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.543790 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13214527 110 + 23771897 ACCUCACCACUGUUCAGUUGGCCAAAAAGG-GGGUGUAGAUGGGCAUGUAGGGCUAGGGAGCCAUAAAAGUUGAACAAAAGCUAUGCGAAACCGACUACCAACCAACCUAG- ......(((((....)).)))......(((-.(((((((.(((...((((.((((....)))).....((((.......)))).))))...))).))))..)))..)))..- ( -24.00) >DroSec_CAF1 7862 112 + 1 ACCCCACCACUGGCCAGUUGGCCAAAAAGGGGGGUGUAGUUGGGUAUGUAGGACCAGGGAGCCAUAAAAGUUGAACAAAAGCUAUGCGAAACUGACUACCAACCAACCUAGA (((((.((..(((((....)))))....)))))))...(((((....((((...(((...((.((...((((.......))))))))....))).))))...)))))..... ( -34.60) >DroSim_CAF1 12938 112 + 1 ACCCCACCACUGGCCAGUUGGCCAAAAAGGGGGGUGUAGUUGGGUAUGUAGGACCAGGGAGUCAUAAAAGUUGAACAAAAGCUAUGCGAAACUGACUACCAACCAACCUAGA (((((.((..(((((....)))))....)))))))...(((((....((((...(((...(.(((...((((.......))))))))....))).))))...)))))..... ( -34.60) >DroYak_CAF1 7793 96 + 1 ACC--AUCACU------------A-AAGAGGGGGUGUAGUUGGGUAUAUAGGGCUAGGGAGCCAUAAAAGUUGAACAAAAGCUUUGCGAAACCGACUGCCAACCAACCUAG- ...--......------------.-...(((.(((((((((((........((((....))))...((((((.......))))))......))))))))..)))..)))..- ( -26.00) >consensus ACCCCACCACUGGCCAGUUGGCCAAAAAGGGGGGUGUAGUUGGGUAUGUAGGACCAGGGAGCCAUAAAAGUUGAACAAAAGCUAUGCGAAACCGACUACCAACCAACCUAG_ .((((.....(((((....)))))....))))(((((((((((...((((.(((......))).....((((.......)))).))))...))))))))..)))........ (-22.81 = -23.88 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:17 2006