Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,213,443 – 13,213,553 |
Length | 110 |
Max. P | 0.948569 |
Location | 13,213,443 – 13,213,553 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -27.31 |
Consensus MFE | -25.64 |
Energy contribution | -25.89 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.94 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948569 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13213443 110 + 23771897 GGUCUCCCAAGUCAUGCACAUGCACACAUGGGUCCAUCCAUGUUCCUGUCUGCAUUUUCGCCAUCC--UCCAGUUUUCCAGCACCGCUUUGCGUGCCAGGAAAAUUGUCUUC (((......((.(((((....))).(((((((....)))))))...)).))........)))....--..(((((((((.((((.((...))))))..)))))))))..... ( -28.04) >DroSec_CAF1 6786 108 + 1 GGUCUCCCAAGUCAUGCAC----ACACAUGGGUCCAUCCAUGUUCCUGUCUGCAUUUUCGCCAUCCUCUCCAGUUUUCCCGCACCGCUUUGCGUGCCAGGAAAAUUGUCUUC (((.....((((((.(((.----..(((((((....)))))))...))).)).))))..)))........(((((((((.((((.((...))))))..)))))))))..... ( -27.70) >DroSim_CAF1 11859 108 + 1 GGUCUCCCAAGUCAUGCAC----ACACAUGGGUCCAUCCAUGUUCCUGUCUGCAUUUUCGCCAUCCUCUCCAGUUUUCCCGCACCGCUUUGCGUGCCAGGAAAAUUGUCUUC (((.....((((((.(((.----..(((((((....)))))))...))).)).))))..)))........(((((((((.((((.((...))))))..)))))))))..... ( -27.70) >DroYak_CAF1 6688 108 + 1 GGUCUCCCAAGUCAUGCAC----ACACAUGGGUCCAUCCAUGUACCCGUCUGCAUUUUCGCCCAACCCCCCAGUUUUCCCGCCCCGCUUUGCGUGCCAGGAAAAUUGUCUUC (((..........(((((.----(((((((((....)))))))....)).))))).........)))...(((((((((.((..(((...))).))..)))))))))..... ( -25.81) >consensus GGUCUCCCAAGUCAUGCAC____ACACAUGGGUCCAUCCAUGUUCCUGUCUGCAUUUUCGCCAUCCUCUCCAGUUUUCCCGCACCGCUUUGCGUGCCAGGAAAAUUGUCUUC ((....)).....(((((.......(((((((....))))))).......)))))...............(((((((((.((((.((...))))))..)))))))))..... (-25.64 = -25.89 + 0.25)
Location | 13,213,443 – 13,213,553 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -33.85 |
Consensus MFE | -28.54 |
Energy contribution | -28.79 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.60 |
Structure conservation index | 0.84 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13213443 110 - 23771897 GAAGACAAUUUUCCUGGCACGCAAAGCGGUGCUGGAAAACUGGA--GGAUGGCGAAAAUGCAGACAGGAACAUGGAUGGACCCAUGUGUGCAUGUGCAUGACUUGGGAGACC .....((.((((((.(((((((...)).))))))))))).))((--(....(((...(((((.(((((..((....))..))..))).))))).)))....)))((....)) ( -34.90) >DroSec_CAF1 6786 108 - 1 GAAGACAAUUUUCCUGGCACGCAAAGCGGUGCGGGAAAACUGGAGAGGAUGGCGAAAAUGCAGACAGGAACAUGGAUGGACCCAUGUGU----GUGCAUGACUUGGGAGACC .(((.((.((((((((.(((((...)).))))))))))).))...............(((((.((....((((((......))))))))----.)))))..)))((....)) ( -32.60) >DroSim_CAF1 11859 108 - 1 GAAGACAAUUUUCCUGGCACGCAAAGCGGUGCGGGAAAACUGGAGAGGAUGGCGAAAAUGCAGACAGGAACAUGGAUGGACCCAUGUGU----GUGCAUGACUUGGGAGACC .(((.((.((((((((.(((((...)).))))))))))).))...............(((((.((....((((((......))))))))----.)))))..)))((....)) ( -32.60) >DroYak_CAF1 6688 108 - 1 GAAGACAAUUUUCCUGGCACGCAAAGCGGGGCGGGAAAACUGGGGGGUUGGGCGAAAAUGCAGACGGGUACAUGGAUGGACCCAUGUGU----GUGCAUGACUUGGGAGACC .....((.((((((((.(.(((...))).).)))))))).))...((((...(((..(((((.((....((((((......))))))))----.)))))...)))...)))) ( -35.30) >consensus GAAGACAAUUUUCCUGGCACGCAAAGCGGUGCGGGAAAACUGGAGAGGAUGGCGAAAAUGCAGACAGGAACAUGGAUGGACCCAUGUGU____GUGCAUGACUUGGGAGACC .(((.((.((((((((...(((...)))...)))))))).))...............(((((.......((((((......)))))).......)))))..)))((....)) (-28.54 = -28.79 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:11 2006