| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,212,707 – 13,212,861 |
| Length | 154 |
| Max. P | 0.904773 |
| Location | 13,212,707 – 13,212,824 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.79 |
| Mean single sequence MFE | -36.11 |
| Consensus MFE | -30.12 |
| Energy contribution | -29.55 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.904773 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13212707 117 + 23771897 UAAUGGCAUCUCAGCUGUCCAAGGCUGUUGUCGAACAAGUUGGCCGUUUGCCGGGGG--A-UUAACUACAUAUUCUACAUAUUCUACAUAUUCCCUGGUAAUCCGCACCGUUGUCCAUUG ....((((...(((((......))))).))))(.((((....((.(.((((((((((--(-(.......((((.....)))).......)))))))))))).).))....)))).).... ( -33.24) >DroSec_CAF1 6075 108 + 1 UAAUGGCAUCUCAGCCGUCCAAGGCUGUUGUCGAACAAGUUGGCCGUUUGCCGGGGG--A-UAAACUACAUAUU---------CUACAUAUUCCCUGGUAGUCCGCAACGUUGUCCAUUG ....((((...(((((......))))).))))(.((((((((.(.(.((((((((((--(-((...........---------.....))))))))))))).).))))).)))).).... ( -37.19) >DroSim_CAF1 11150 108 + 1 UAAUGGCAUCUCAGCCGUCCAAGGCUGUUGUCGAACAAGUUGGCGGUUUGCCGGGGG--A-UAAACUACAUAUU---------CUACAUAUUCCCUGGUAGUCUGCACCGUUGUCCAUUG ....((((...(((((......))))).))))(.((((....((((.((((((((((--(-((...........---------.....))))))))))))).))))....)))).).... ( -39.49) >DroYak_CAF1 5943 111 + 1 UAAUGGCAUCUCAGUCGUCCAAGGCUGUUGUCGAACAAGUUGGCCGUUUGCCGGGGGGGAUUAAGCUACAUAUU---------CUACAUAUUCCCUGGUAGACCGCACCGUUGUCCAUUG ....((((...(((((......))))).))))(.((((....((.(((((((((((((................---------.......))))))))))))).))....)))).).... ( -34.50) >consensus UAAUGGCAUCUCAGCCGUCCAAGGCUGUUGUCGAACAAGUUGGCCGUUUGCCGGGGG__A_UAAACUACAUAUU_________CUACAUAUUCCCUGGUAGUCCGCACCGUUGUCCAUUG ....((((...(((((......))))).))))(.((((....((.(.((((((((((..................................)))))))))).).))....)))).).... (-30.12 = -29.55 + -0.56)
| Location | 13,212,747 – 13,212,861 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 91.44 |
| Mean single sequence MFE | -33.48 |
| Consensus MFE | -27.52 |
| Energy contribution | -27.33 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.801070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13212747 114 + 23771897 UGGCCGUUUGCCGGGGG--A-UUAACUACAUAUUCUACAUAUUCUACAUAUUCCCUGGUAAUCCGCACCGUUGUCCAUUGGCCAUUCAGGCCACCGAUCAUAGCGAACACAUUUGGA ..((.(.((((((((((--(-(.......((((.....)))).......)))))))))))).).))..((((((....(((((.....)))))......))))))............ ( -32.24) >DroSec_CAF1 6115 105 + 1 UGGCCGUUUGCCGGGGG--A-UAAACUACAUAUU---------CUACAUAUUCCCUGGUAGUCCGCAACGUUGUCCAUUGGCCAUUCAGGCCACCGAUCAUAGCGAACACAUUUGGA ..((.(.((((((((((--(-((...........---------.....))))))))))))).).))..((((((....(((((.....)))))......))))))............ ( -32.19) >DroSim_CAF1 11190 105 + 1 UGGCGGUUUGCCGGGGG--A-UAAACUACAUAUU---------CUACAUAUUCCCUGGUAGUCUGCACCGUUGUCCAUUGGCCAUUCAGGCCACCGAUCAUAGCGAACACAUUUGGA ..((((.((((((((((--(-((...........---------.....))))))))))))).))))..((((((....(((((.....)))))......))))))............ ( -35.89) >DroYak_CAF1 5983 108 + 1 UGGCCGUUUGCCGGGGGGGAUUAAGCUACAUAUU---------CUACAUAUUCCCUGGUAGACCGCACCGUUGUCCAUUGGCCAUUCAGGCCACCGAUCAUAGCGAACACAUUUGGA ..((.(((((((((((((................---------.......))))))))))))).))..((((((....(((((.....)))))......))))))............ ( -33.60) >consensus UGGCCGUUUGCCGGGGG__A_UAAACUACAUAUU_________CUACAUAUUCCCUGGUAGUCCGCACCGUUGUCCAUUGGCCAUUCAGGCCACCGAUCAUAGCGAACACAUUUGGA ..((.(.((((((((((..................................)))))))))).).))..((((((....(((((.....)))))......))))))............ (-27.52 = -27.33 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:09 2006