Locus 4666

Sequence ID 3L_DroMel_CAF1
Location 13,212,262 – 13,212,371
Length 109
Max. P 0.807525
window7342

overview

Window 2

Location 13,212,262 – 13,212,371
Length 109
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 95.68
Mean single sequence MFE -27.09
Consensus MFE -23.88
Energy contribution -24.44
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -1.94
Structure conservation index 0.88
SVM decision value 0.64
SVM RNA-class probability 0.807525
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13212262 109 - 23771897
CCCUAGAAGCAAAGGCAAAUAAAGUUUAUUACCCAAUUGCCGUGUGCCGUUUUAGAAUUUCUGGCAGUUUUUUUCGGCAUUAAUGCGAAGUUUAUUUCGCCUUCGUUUU
.....(((((.((((((((((((((.....))....((((...((((((....((((((......))))))...))))))....))))..))))))).))))).))))) ( -26.40)
>DroSec_CAF1 5624 107 - 1
CCC-AGAAGCGAAGGCAAAUAAAGUUUAUUACCCAAUAGCCGUCUGCCUUUUUAGAAUUUCUGGCAGUUU-UUUCGGCAUUAAUGCGAAGUUUAUUUCGUCUUCGUUUU
...-.((((((((((((((((((.((..(.....(((.((((.(((((..............)))))...-...)))))))...)..)).))))))).))))))))))) ( -30.94)
>DroSim_CAF1 10696 107 - 1
CCC-AGAAGCGAAGGCAAAUAAAGUUUAUUACCCAAUAGCCGUGUGCCUUUUUAGAAUUUCUGGCAGUUU-UUUCGGCAUUAAUGCGAAGUUUAUUUCGCCUUCGUUUU
...-.((((((((((((((((((.((..(.....(((.((((..((((..............))))....-...)))))))...)..)).))))))).))))))))))) ( -29.94)
>DroYak_CAF1 5479 107 - 1
CCC-AGAAGCAAAGGCAAAUAAAGUUUAUUACCCAAUGGCCGUGUGCCGUUUUAGAAUUUCUGGCAGUUU-UUUCGGCAUUAAUGCGAAGUUUAUUUCUCCUUCGUUUU
...-.(((((.((((.(((((((.((((((....))).((...((((((....((((((......)))))-)..))))))....))))).)))))))..)))).))))) ( -21.10)
>consensus
CCC_AGAAGCAAAGGCAAAUAAAGUUUAUUACCCAAUAGCCGUGUGCCGUUUUAGAAUUUCUGGCAGUUU_UUUCGGCAUUAAUGCGAAGUUUAUUUCGCCUUCGUUUU
.....((((((((((((((((((.((..(.....(((.((((..((((..............))))........)))))))...)..)).))))))).))))))))))) (-23.88 = -24.44 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:07 2006