| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,212,120 – 13,212,222 |
| Length | 102 |
| Max. P | 0.574826 |
| Location | 13,212,120 – 13,212,222 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 87.06 |
| Mean single sequence MFE | -20.36 |
| Consensus MFE | -13.39 |
| Energy contribution | -14.70 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574826 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13212120 102 + 23771897 AGCCCAUCUUGGGUGGUCCCAA--AGACUUUGUUUUUACGACCAAGUCGGUACUCCAGUUCGUUUUACGAUUCAAACACCAAACACACACACACACACACAACA .((((.....))))((((..((--((((...))))))..)))).....(((........(((.....))).......)))........................ ( -17.86) >DroSec_CAF1 5487 97 + 1 AGCCCAUCUUGGGUGGUCCAAA--AGACUUGGUUUUUACGACCAAGUCGGUACUCCAGUUCGUUUUACGAUUCAA---CCAAUCACACA--CACAAACACAACA .((((.....))))(((.....--.(((((((((.....)))))))))((....))...(((.....)))....)---)).........--............. ( -23.40) >DroSim_CAF1 10559 97 + 1 AGCCCAUCUUGGGUGGUCCAAA--AGACUUGGUUUUUACGACCAAGUCGGUACUCCAGUUCGUUUUACGAUUCAA---CCAAACACACA--CACACACACAACA .((((.....))))(((.....--.(((((((((.....)))))))))((....))...(((.....)))....)---)).........--............. ( -23.40) >DroYak_CAF1 5348 91 + 1 AGCCCAUCUUGGGAGGUCCAAAAAAGUCUUUGCUUUUACGACCUAGUCGGUACUCCUGUUCGUUUUAUGAUUCAA---GCAAACAC----------ACACAACA ..(((.....)))(((((...((((((....))))))..)))))....((....))((((.((((........))---)).)))).----------........ ( -16.80) >consensus AGCCCAUCUUGGGUGGUCCAAA__AGACUUGGUUUUUACGACCAAGUCGGUACUCCAGUUCGUUUUACGAUUCAA___CCAAACACACA__CACACACACAACA .((((.....))))...........(((((((((.....)))))))))((....))...(((.....))).................................. (-13.39 = -14.70 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:06 2006