| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,189,107 – 13,189,205 |
| Length | 98 |
| Max. P | 0.612732 |
| Location | 13,189,107 – 13,189,205 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 68.01 |
| Mean single sequence MFE | -15.51 |
| Consensus MFE | -8.21 |
| Energy contribution | -8.77 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612732 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13189107 98 - 23771897 CGGAGAAUGAGAAAAAUCAUUUUUUUCUCUUCCA-UCUCGAUUGAACACAAGAGAAAAUAUUGAAAUAUUUAAAAAGAACU--ACACUUUUAAAACAA--UAA .((((...((((((((.....)))))))))))).-((((............))))...(((((.....(((.(((((....--...))))).))))))--)). ( -15.20) >DroEre_CAF1 44156 88 - 1 GGGAAAAUGAAA-AAAUCAUUUUUUUCUCUACCAUUCUCGAUGGAACACUGCAGAAAAUAA---GA---------AGAGCUGUAUGCAUAUAAAGCAA--UAU ((((((((((..-...))))...))))))..(((((...))))).....(((((.......---..---------....)))))(((.......))).--... ( -12.42) >DroYak_CAF1 39983 89 - 1 GGGAGAAUGAAA-AAA-CAUUUUUUUCUCUACCAUUCUCGAGGGAACACUUGAGAAAAUAUUUAAA---------UGUUUUUUAUGAAAAU---GCAACAUAC .((((((.((((-...-..)))).))))))....((((((((......)))))))).........(---------((((...(((....))---).))))).. ( -18.90) >consensus GGGAGAAUGAAA_AAAUCAUUUUUUUCUCUACCAUUCUCGAUGGAACACUAGAGAAAAUAUU_AAA_________AGAACU_UAUGCAUAUAAAGCAA__UAA ..((((((((......))))))))(((((((...(((......)))...)))))))............................................... ( -8.21 = -8.77 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:37 2006