Locus 4653

Sequence ID 3L_DroMel_CAF1
Location 13,188,773 – 13,188,872
Length 99
Max. P 0.807840
window7309

overview

Window 9

Location 13,188,773 – 13,188,872
Length 99
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 81.62
Mean single sequence MFE -25.40
Consensus MFE -16.33
Energy contribution -17.77
Covariance contribution 1.45
Combinations/Pair 1.20
Mean z-score -2.30
Structure conservation index 0.64
SVM decision value 0.64
SVM RNA-class probability 0.807840
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13188773 99 + 23771897
UGCCACAAUAGGCAGGCAC-----CACUGUGCCCCUUCGCACUCACCCC---ACAUUCUGCC--UUUGAUGGCCAACUGAAAACUCGAUUUAAAUCCAGUGCAUAUGCA
.(((((((.(((((((...-----....((((......)))).......---....))))))--)))).)))).........(((.(((....))).)))((....)). ( -23.87)
>DroSec_CAF1 40293 99 + 1
UGCCAUAAUAGGCAGGCAC-----CACUGUGCCCCUCCGCACUCACCCC---ACAUUCUGCC--UUUGAUGGCCAACUGGAAACUCGAUUUAUAUCCAGUGCAUAUGCA
.(((((...(((((((...-----....((((......)))).......---....))))))--)...)))))..((((((.............))))))((....)). ( -29.09)
>DroSim_CAF1 38537 99 + 1
UGCCACAAUAGGCAGGCAC-----CACUGUGCCCCUCCGCACUCACCCC---ACAUUCUGCC--UUUGAUGGCCAACUGGAAACUCGAUUUAAAUCCAGUGCAUAUGCA
.(((((((.(((((((...-----....((((......)))).......---....))))))--)))).))))..((((((.............))))))((....)). ( -28.09)
>DroEre_CAF1 43854 90 + 1
UGCCACAAUAGGCAGGCAC-----CACUGUGCACCACCCCA------------CCUCCGCUC--UUUGAUGGCCAGCUGGAAACUCGAUUUAAAUCCAGUGCAUAUGCA
.(((((((..(((..((((-----....)))).........------------.....))).--.))).))))..((((((.............))))))((....)). ( -21.01)
>DroYak_CAF1 39665 102 + 1
UGCCACAAUAGGCAGGCAC-----CACUGUGCCCCUCCGCACUCACCCCCCCGCUGCCUGUC--UUUGAUGGCCAACUGGAAACUCGAUUUAAAUCCAGUGCAUAUGCA
.(((((((.(((((((((.-----....((((......))))............))))))))--)))).))))..((((((.............))))))((....)). ( -31.75)
>DroMoj_CAF1 91961 105 + 1
UGGCGCAAUGGGCACGCAAUCAAACACCCUCCCGCUCCCCAUUCCCCC----UUAACUUGUCUGUGCAAUGGCCAACUCGAAACUCAAUUUAAAUCCAGUGCAUAUGCA
.((.(.((((((...((................))..)))))).).))----......(((.((((((.(((.......................))).)))))).))) ( -18.59)
>consensus
UGCCACAAUAGGCAGGCAC_____CACUGUGCCCCUCCGCACUCACCCC___ACAUCCUGCC__UUUGAUGGCCAACUGGAAACUCGAUUUAAAUCCAGUGCAUAUGCA
.(((((((..((((((............((((......))))..............))))))...))).))))..((((((.............))))))((....)). (-16.33 = -17.77 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:36 2006