Locus 4652

Sequence ID 3L_DroMel_CAF1
Location 13,188,083 – 13,188,192
Length 109
Max. P 0.872145
window7308

overview

Window 8

Location 13,188,083 – 13,188,192
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.46
Mean single sequence MFE -33.50
Consensus MFE -29.89
Energy contribution -30.33
Covariance contribution 0.45
Combinations/Pair 1.10
Mean z-score -1.86
Structure conservation index 0.89
SVM decision value 0.88
SVM RNA-class probability 0.872145
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13188083 109 + 23771897
CAGACUCAAGAGCGAAAGUCUCUUACCUUUCACAGCAAGGU--UCGAUUGAGCGUUCUGGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAGUUUU---------UUUUU
((((...((((((....).)))))........(((.((.((--((....)))).)))))((((((...))))))(((((.......))))).))))..........---------..... ( -33.00)
>DroVir_CAF1 84421 120 + 1
CAGACUCAAGAGCAUAUAACUCUUGCCUUUCGUAGAAAGGUGUUUGAAUGAGAAUUCUGGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAAUAUUUUUGGUACUAUUUG
((((((((((((.......)))))(((((((...)))))))........))).......((((((...))))))(((((.......))))).)))).((((.....)))).......... ( -32.30)
>DroSim_CAF1 37859 109 + 1
CAGACUCAAGAGCGAAAGUCUCUUACCUUUCACAGCAAGGU--UCGAUUGAGCGUUCUGGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAUUAUU---------UUUUU
((((...((((((....).)))))........(((.((.((--((....)))).)))))((((((...))))))(((((.......))))).))))..........---------..... ( -33.00)
>DroEre_CAF1 43058 108 + 1
CAGACUCAAGAGCGAAAGUCUCUUACCCUUCGCAGCAGGGU--UCGAUUGAGCGUUCUGGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAAUCU----------UUUUA
((((....((((((..((((....(((((.......)))))--..))))...)))))).((((((...))))))(((((.......))))).)))).........----------..... ( -34.90)
>DroYak_CAF1 38842 109 + 1
CAGACUCAAGAGCGAAAGUCUCUUACCCUUCGCAGCAGGGU--UCGAUUGAGCGUUCUGGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAUUAUU---------UUUUA
((((....((((((..((((....(((((.......)))))--..))))...)))))).((((((...))))))(((((.......))))).))))..........---------..... ( -34.90)
>DroMoj_CAF1 90896 111 + 1
CAGACUCAAGAGCUGUAAACUCUUGCCUUUGAUACAAAGGUGAAAAUGUGAGCGUUCUGGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAUUU---------CUUUUUA
((((....(((((.((..((..(..((((((...))))))..)....))..))))))).((((((...))))))(((((.......))))).))))........---------....... ( -32.90)
>consensus
CAGACUCAAGAGCGAAAGUCUCUUACCUUUCACAGCAAGGU__UCGAUUGAGCGUUCUGGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAUUAUU_________UUUUA
((((....((((((..((((....(((((.......)))))....))))...)))))).((((((...))))))(((((.......))))).))))........................ (-29.89 = -30.33 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:36 2006