Locus 4651

Sequence ID 3L_DroMel_CAF1
Location 13,186,272 – 13,186,391
Length 119
Max. P 0.976151
window7307

overview

Window 7

Location 13,186,272 – 13,186,391
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.98
Mean single sequence MFE -34.42
Consensus MFE -32.22
Energy contribution -33.22
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.94
SVM decision value 1.76
SVM RNA-class probability 0.976151
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13186272 119 - 23771897
AAUAG-CUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGGUGAAUAUUGGCCGCCAAACUACUGUUUAUCAAAGAA
.....-(((.((((((((((((.......)))))......((((.......))))...................))))))).((((((((.(((........))).)))))))).))).. ( -35.30)
>DroSec_CAF1 37781 119 - 1
AAUAA-CUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGGUGAAUACUGGCCGCCAAACUACUGUUUAUAAAAGAA
.....-(((.((((((((((((.......)))))......((((.......))))...................))))))).((((.........))))((((....))))....))).. ( -33.00)
>DroSim_CAF1 36021 119 - 1
AAUAA-CUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGGUGAAUAUUGGCCGCUAAACUACUGUUUAUCAAAGAA
.....-(((.((((((((((((.......)))))......((((.......))))...................))))))).((((((((.(((........))).)))))))).))).. ( -35.60)
>DroEre_CAF1 41304 119 - 1
AACUA-CUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGGUGCAUAUCGGCCGCCAAACUACUGCUUAUCAAAGAA
.....-(((.((((((((((((.......)))))......((((.......))))...................))))))).(((((......).))))................))).. ( -33.00)
>DroYak_CAF1 36961 120 - 1
AACAAUCUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGGUGAAUAUCGGCGGCCAAACUACUGUUUAUCAAAGAA
.....((((.((((((((((((.......)))))......((((.......))))...................))))))).((((((((..((........))..)))))))).)))). ( -35.20)
>consensus
AAUAA_CUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGGUGAAUAUUGGCCGCCAAACUACUGUUUAUCAAAGAA
......(((.((((((((((((.......)))))......((((.......))))...................))))))).((((((((.(((........))).)))))))).))).. (-32.22 = -33.22 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:35 2006