Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,186,272 – 13,186,391 |
Length | 119 |
Max. P | 0.976151 |
Location | 13,186,272 – 13,186,391 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.98 |
Mean single sequence MFE | -34.42 |
Consensus MFE | -32.22 |
Energy contribution | -33.22 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.94 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.976151 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13186272 119 - 23771897 AAUAG-CUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGGUGAAUAUUGGCCGCCAAACUACUGUUUAUCAAAGAA .....-(((.((((((((((((.......)))))......((((.......))))...................))))))).((((((((.(((........))).)))))))).))).. ( -35.30) >DroSec_CAF1 37781 119 - 1 AAUAA-CUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGGUGAAUACUGGCCGCCAAACUACUGUUUAUAAAAGAA .....-(((.((((((((((((.......)))))......((((.......))))...................))))))).((((.........))))((((....))))....))).. ( -33.00) >DroSim_CAF1 36021 119 - 1 AAUAA-CUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGGUGAAUAUUGGCCGCUAAACUACUGUUUAUCAAAGAA .....-(((.((((((((((((.......)))))......((((.......))))...................))))))).((((((((.(((........))).)))))))).))).. ( -35.60) >DroEre_CAF1 41304 119 - 1 AACUA-CUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGGUGCAUAUCGGCCGCCAAACUACUGCUUAUCAAAGAA .....-(((.((((((((((((.......)))))......((((.......))))...................))))))).(((((......).))))................))).. ( -33.00) >DroYak_CAF1 36961 120 - 1 AACAAUCUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGGUGAAUAUCGGCGGCCAAACUACUGUUUAUCAAAGAA .....((((.((((((((((((.......)))))......((((.......))))...................))))))).((((((((..((........))..)))))))).)))). ( -35.20) >consensus AAUAA_CUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGGUGAAUAUUGGCCGCCAAACUACUGUUUAUCAAAGAA ......(((.((((((((((((.......)))))......((((.......))))...................))))))).((((((((.(((........))).)))))))).))).. (-32.22 = -33.22 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:35 2006