Locus 465

Sequence ID 3L_DroMel_CAF1
Location 1,337,343 – 1,337,445
Length 102
Max. P 0.872320
window686

overview

Window 6

Location 1,337,343 – 1,337,445
Length 102
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 78.75
Mean single sequence MFE -23.20
Consensus MFE -16.09
Energy contribution -17.27
Covariance contribution 1.19
Combinations/Pair 1.16
Mean z-score -1.90
Structure conservation index 0.69
SVM decision value 0.88
SVM RNA-class probability 0.872320
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1337343 102 - 23771897
-------UCUUGGUCUGAUUGUUAGAAUAAUCUAAUAUUCUGACGGAUAAACACUAUGAUUUUUCAAAGAAA-----------GAGUUUUUCAGAUCAAACAACUGAGAACAUAAUCAAA
-------..((((((((((((((((((((......))))))))))).......((.(((....))).))...-----------.......))))))))).....(((........))).. ( -23.10)
>DroSec_CAF1 9525 109 - 1
GUUGUGAUCUUGGUCGGAUUGUUAGAAUAAUCCAAUAUUCUGACGGAUAAACACUAUGAUUUUUCAAAGAAA-----------GAGUUUCUCUGAUCAAAGAACUGAGAACGUAAUCAAA
(((.(.(((((((((((((((((((((((......))))))))))).......((.(((....))).))...-----------.......))))))).))))..).).)))......... ( -24.00)
>DroSim_CAF1 9635 109 - 1
GUUGUGAUCUUGGUCGGAUUGUUAGAAUAAUCCAAUAUUCUGACGGAUAAACACUAUGAUUUUUCAAAGAAA-----------GAGUUUCUCUGAUCAAAGAACUGAGAACGUAAUCAAA
(((.(.(((((((((((((((((((((((......))))))))))).......((.(((....))).))...-----------.......))))))).))))..).).)))......... ( -24.00)
>DroEre_CAF1 9801 113 - 1
GUGGUGA------UCAGAUUGAUCGAAUAAUCCAACAUUUGGCCGCAUAAACACCAUGAUUUUUCAAAGAAAAGCCAAACAAGUGUUUCUGCUGAUCAAACAAGU-AGAAGCUAAUCAAA
(((((((------((.....))))((((........)))).)))))..........((..(((((...)))))..)).......(((((((((.........)))-))))))........ ( -21.70)
>consensus
GUUGUGAUCUUGGUCGGAUUGUUAGAAUAAUCCAAUAUUCUGACGGAUAAACACUAUGAUUUUUCAAAGAAA___________GAGUUUCUCUGAUCAAACAACUGAGAACGUAAUCAAA
.........((((((((((((((((((((......))))))))))).......((.(((....))).)).....................)))))))))..................... (-16.09 = -17.27 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:36 2006