| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,185,762 – 13,185,875 |
| Length | 113 |
| Max. P | 0.835903 |
| Location | 13,185,762 – 13,185,875 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.00 |
| Mean single sequence MFE | -24.57 |
| Consensus MFE | -19.80 |
| Energy contribution | -20.60 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.835903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13185762 113 - 23771897 ACCAAUUUGGUCUGAACCAAGUAAUUGUUAUUAUUUAAAGGAUCGAAUAUCUUUGCAACCUCUAUGACUUUGAAAU-------AGCCUUAAACAAGUUGUAGCACUUUAAAAACUGAAAG ....(((((((((.....(((((((....)))))))...))))))))).............(((..((((......-------..........))))..))).................. ( -15.09) >DroSec_CAF1 37274 120 - 1 ACCAAUUUGGUCUGAACCAAGUAAUUGUUAUUAUUUAAAGGAUCGAAUAUCUUUGCAACCUCGAUGACUUUGAAAACGGCGUAAGCCUUAAAAAAGUUGUAGCAAUUUAAAAUAUACAAA ....(((((((....)))))))(((((((((..(((((((.(((((..............)))))..)))))))...(((....)))...........)))))))))............. ( -26.24) >DroSim_CAF1 35515 120 - 1 ACCAAUUUGGUCUGAACCAAGUAAUUGUUAUUAUUUAAAGGAUCGAAUAUCUUUGCAGCAUUGAUGACUUUGAAAAAGGCGUAAGCCUUAAAAAAGUUGUAGCAAUUUAAAAUAUACAAA ....(((((((....)))))))..((((...(((((.((((((.....))))))...((....(..(((((....(((((....)))))...)))))..).))......))))).)))). ( -27.10) >DroEre_CAF1 40772 105 - 1 ACCAAUUUGGUCUGAACCGAGUAAUUGUUAUUAUUUAAAGGAUCGAAUAUCAUUGCAGCCUCGAUGACUUUGAAAAAGCCGUAAGCCUUAAAAAAGUUGCA---------------AAGA ....(((((((((.....(((((((....)))))))...))))))))).((.(((((((.((((.....))))..(((.(....).)))......))))))---------------).)) ( -22.60) >DroYak_CAF1 36438 120 - 1 ACCAAUUUGGUCUGAACCGAGUAAUUGUUAUUAUUUAAAGGAUCGAAUAUCGUUGCAGCCUCGAUGACUUUGAAAAAGGCGCAAGCCUUGAAAAAGUUGUAGCAAUUUAAAAAAAAAUGA ....(((((((((.....(((((((....)))))))...)))))))))...((((((((.((((.....))))..(((((....)))))......))))))))................. ( -31.80) >consensus ACCAAUUUGGUCUGAACCAAGUAAUUGUUAUUAUUUAAAGGAUCGAAUAUCUUUGCAGCCUCGAUGACUUUGAAAAAGGCGUAAGCCUUAAAAAAGUUGUAGCAAUUUAAAAAAUAAAAA ....(((((((((.....(((((((....)))))))...))))))))).....((((((.((((.....))))..(((((....)))))......))))))................... (-19.80 = -20.60 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:31 2006