Locus 4648

Sequence ID 3L_DroMel_CAF1
Location 13,185,460 – 13,185,579
Length 119
Max. P 0.959131
window7303

overview

Window 3

Location 13,185,460 – 13,185,579
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.72
Mean single sequence MFE -33.38
Consensus MFE -27.88
Energy contribution -27.84
Covariance contribution -0.04
Combinations/Pair 1.15
Mean z-score -1.94
Structure conservation index 0.84
SVM decision value 1.50
SVM RNA-class probability 0.959131
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13185460 119 - 23771897
UGGUUUCCUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGUGAAACGC-AGACCACACUAAUUUAUAUCAGUC
((((((.(...((((((((((((.......)))))......((((.......))))...................))))))).(((....)))).-)))))).................. ( -33.90)
>DroSec_CAF1 37007 120 - 1
UAAUUUCCUUGGGCUCGUCCGGGAUUUGAACCCGGAACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGGAAGUCAAAAUACCACACUAAUUUAUAUCACUU
..((((((...((((((((((((.......)))))).....((((.......))))....................))))))....))))))............................ ( -34.20)
>DroSim_CAF1 35249 120 - 1
UAAUUUCCUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGAAAAUCGAAAGACCACACUAAUUUAUAUCAGUU
...((((....((((((((((((.......)))))......((((.......))))...................)))))))....)))).((....))..................... ( -32.00)
>DroEre_CAF1 40491 119 - 1
UAUUCUUCUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCGGUUGGAAAUCGC-AGGCAAAACUAGUCUAUAUAAAUU
..((((...(.((((((((((((.......)))))......((((.......))))...................))))))).)..)))).....-((((.......))))......... ( -33.00)
>DroYak_CAF1 36192 119 - 1
UUAUUUCCUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGAAAAUCAG-AGGCAAAACUAGUCUUUAUCAGUU
...((((....((((((((((((.......)))))......((((.......))))...................)))))))....))))...((-((((.......))))))....... ( -33.80)
>consensus
UAAUUUCCUUGGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGAAAAUCGA_AGACCACACUAAUUUAUAUCAGUU
...((((....((((((((((((.......)))))......((((.......))))...................)))))))....)))).............................. (-27.88 = -27.84 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:30 2006