| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,185,130 – 13,185,248 |
| Length | 118 |
| Max. P | 0.606253 |
| Location | 13,185,130 – 13,185,248 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.96 |
| Mean single sequence MFE | -41.52 |
| Consensus MFE | -37.31 |
| Energy contribution | -36.90 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606253 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13185130 118 + 23771897 AAAAAGUACUUUCGCGGCCGUCGUUCAACUGGCUCGUUGGUCUAGGGGUAUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCAAGUGCAG--UAUAUAUU .....((((((..(((((((((((.(..((((((....)).))))..).)))))((((((.......))))))))))(((((.......)))))....))..))))))..--........ ( -40.90) >DroVir_CAF1 68995 119 + 1 CUA-GCAAAUUAUGCGAGCUUUGUUCAACUGGCUCGUUGGUCUAGGGGUAUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCAAGUUGUGAAUACUUUUU ...-(((.....)))......(((((((((((((((((.......(((.....(((((((.......)))))))..)))(((.......))).))))))))..)))..))))))...... ( -38.90) >DroSec_CAF1 36676 118 + 1 AAAAAGUACUUUCGCGGCCGAUGGUCAACUGGCUCGUUGGUCUAGGGGUAUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCAAGUACAG--UAAAUAUU .....((((((....(((((((((((....))).))))))))...((((....(((((((.......)))))))((((.(((.......)))))))..))))))))))..--........ ( -46.20) >DroSim_CAF1 34918 118 + 1 AAAAAGUACUUUCGCGGCAGAUGGUCAACUGGCUCGUUGGUCUAGGGGUAUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCAAGUACAG--UAAAUAUU .....((((((....(((.(((((((....))).)))).)))...((((....(((((((.......)))))))((((.(((.......)))))))..))))))))))..--........ ( -40.40) >DroEre_CAF1 40157 118 + 1 AAAAAGUACUUUCGCGGCCGAUGUUCAACUGGCUCGUUGGUCUAGGGGUAUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCAAAUGCUG--UUCGUAUU ....(((((...(((((((((((.((....))..))))))))...((((....(((((((.......)))))))((((.(((.......)))))))..))))....)).)--...))))) ( -39.30) >DroYak_CAF1 35865 118 + 1 AAAAAGUACUUUCGCGGGCGACGUUCAACUGGCUCGUUGGUCUAGGGGUAUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCAAGUGCAG--UACAUAUU .....(((((..(((((((..(((((....((((....))))..(((((.(((..(((((.......))(((....)))))).))).)))))))))).))))..))).))--)))..... ( -43.40) >consensus AAAAAGUACUUUCGCGGCCGAUGUUCAACUGGCUCGUUGGUCUAGGGGUAUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCAAGUGCAG__UACAUAUU .....((((((....(((.....)))....((((((((.......(((.....(((((((.......)))))))..)))(((.......))).)))))))).))))))............ (-37.31 = -36.90 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:29 2006