Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,184,523 – 13,184,618 |
Length | 95 |
Max. P | 0.930752 |
Location | 13,184,523 – 13,184,618 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 95.77 |
Mean single sequence MFE | -21.50 |
Consensus MFE | -20.97 |
Energy contribution | -20.97 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.12 |
Structure conservation index | 0.98 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13184523 95 - 23771897 UAUUUUUUAGGGAUAGCUGUUGCUUCUUUUUAACCAGGGGUGACCCGCAUUGAUUUUUGUGAUUUUUCUCCGUCUUUUGCAGCCCUUUAAAGUUU .(((((..((((..(((....)))............(((....)))(((..(((....(.((....)).).)))...)))..))))..))))).. ( -21.40) >DroSim_CAF1 34312 94 - 1 UAUUUUUUAGGGAUAGCUGUUGCUUCUUUUUAA-CAGGGGUGACCCGCAUUGAUUUUUGUGAUUUUUCUCCGUCUUUUGCAGCCCUUUAAAGUUU .(((((..((((..(((....))).........-..(((....)))(((..(((....(.((....)).).)))...)))..))))..))))).. ( -21.40) >DroEre_CAF1 39549 93 - 1 UAUUUUUUAGGGAUAGCUGUUGCUUUU-UUUAA-CAGGGGUGACCCGCAUUGAUUUUUAGGAUUUUUCGCCGUCUUUUGCAGCCCUUUAAAGUUU .(((((..((((..(((....)))...-.....-..(((....)))(((..(((.....((........)))))...)))..))))..))))).. ( -21.70) >consensus UAUUUUUUAGGGAUAGCUGUUGCUUCUUUUUAA_CAGGGGUGACCCGCAUUGAUUUUUGUGAUUUUUCUCCGUCUUUUGCAGCCCUUUAAAGUUU .(((((..((((..(((....)))............(((....)))(((..(((......((....))...)))...)))..))))..))))).. (-20.97 = -20.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:26 2006