Locus 4641

Sequence ID	3L_DroMel_CAF1
Location	13,180,090 – 13,180,189
Length	99
Max. P	0.680797

overview

Window 6

Location	13,180,090 – 13,180,189
Length	99
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	89.72
Mean single sequence MFE	-24.85
Consensus MFE	-22.36
Energy contribution	-22.05
Covariance contribution	-0.31
Combinations/Pair	1.13
Mean z-score	-1.45
Structure conservation index	0.90
SVM decision value	0.31
SVM RNA-class probability	0.680797
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13180090 99 - 23771897
AAACUCUGGGUCGGCACGCUUUUAAUUUCCAGCUAAUUUGGAGGCCCCAAAUCCGCGCUCACACAGCG----------------AAAAAGCGAAAACUUCCCGAGCCAAUCGACA
......(((.((((..(((((((........((..((((((.....))))))..))(((.....))).----------------.)))))))........)))).)))....... ( -25.80)
>DroSec_CAF1 31520 99 - 1
AAACUCCGGGUCGGCACGCUUUUAAUUUCCAGCUAAUUUGGAGGCCCCAAAUCCGCGCUCACACAGCG----------------AAAAAGCGAAAACUUCCCGAGCCAAUCGACA
.......((.((((..(((((((........((..((((((.....))))))..))(((.....))).----------------.)))))))........)))).))........ ( -25.30)
>DroSim_CAF1 29767 99 - 1
AAACCCUGGGUCGGCACGCUUUUAAUUUCCAGCUAAUUUGGAGGCCCCAAAUCCGCGCUCACACAGCG----------------AAAAAGCGAAAACUUCCCGAGCCAAUCGACA
......(((.((((..(((((((........((..((((((.....))))))..))(((.....))).----------------.)))))))........)))).)))....... ( -25.80)
>DroYak_CAF1 30685 115 - 1
AAACUCUGGGUCGGCACGCUUUUAAUUUCCAGCUAAUUUGGAGGCCCCAAGUCCGCGCUCACACAGGGAAAAAAUCGAACAAAAAAAAAGCGAAAACUCCCCAAGCCAAUCGACA
......((((..(...(((((((........((..((((((.....))))))..)).(((.....))).................)))))))....)..))))............ ( -22.50)
>consensus
AAACUCUGGGUCGGCACGCUUUUAAUUUCCAGCUAAUUUGGAGGCCCCAAAUCCGCGCUCACACAGCG________________AAAAAGCGAAAACUUCCCGAGCCAAUCGACA
......((((..(...(((((((........((..((((((.....))))))..))(((.....)))..................)))))))....)..))))............ (-22.36 = -22.05 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:14 2006