Locus 4637

Sequence ID 3L_DroMel_CAF1
Location 13,175,462 – 13,175,574
Length 112
Max. P 0.733666
window7278

overview

Window 8

Location 13,175,462 – 13,175,574
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 95.09
Mean single sequence MFE -24.06
Consensus MFE -19.56
Energy contribution -19.72
Covariance contribution 0.16
Combinations/Pair 1.12
Mean z-score -1.64
Structure conservation index 0.81
SVM decision value 0.43
SVM RNA-class probability 0.733666
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13175462 112 - 23771897
AUUGCAAUUCCCGCUCUUAGCUAUUUUGCUUGGAUUGUUUGGUGGAAAUUCACACCAGAAAUUGUUCAAACGGAAAACACCAUCAAAAAUACUAAUAACCUCAGUCGAAGCA
............((.....)).....(((((.((((((((((((........)))))))............((......))....................))))).))))) ( -22.70)
>DroSec_CAF1 26893 112 - 1
AUUGCAAUUCCCACUCUAAGCUAUUUUGCUUGGAUUGUUUGGUGGAAAUUCACACCAGAAAUUGUUCAAACGGAAAACACCAUCAAAAAUACUAAUAACCUCAGUCAGAGCA
..(((..((((((.(((((((......))))))).))(((((((........)))))))............)))).........................((.....))))) ( -23.60)
>DroSim_CAF1 25207 112 - 1
AUUGCAAUUCCCGCUCUUAGCUAUUUUGCUUGGAUUGUUUGGUGGAAAUUCACACCAGAAAUUGUUCAAACGGAAAACACCAUCAAAAAUACUAAUAACCUCAGUCGGAGCA
............(((((.(((......)))..((((((((((((........)))))))............((......))....................)))))))))). ( -23.40)
>DroEre_CAF1 30838 112 - 1
AUUGCAAUUCCCGCUCUUAGCUAUUUUGCUUGGAUUGUUUGGUGGAAAUUCACACCAGAAAUUGUUCAAACGGAAAACACCAUCAAAAAUACUAAUAACCCCAGUAGGAGCA
............(((((((((......))((((((..(((((((........)))))))....))))))..((......)).......................))))))). ( -25.20)
>DroYak_CAF1 25859 112 - 1
AUUGCCAUUCCCGCUUUCAGCUAUUUUGCUUGAAUGGCUUGGUGGGAAUUCACACCAGAAAUUGUUCAAACGGAAAGCACCAUCAAAAAUACUAAUAACCUCAGUCGGAGCA
..(((.(((((((((...((((((((.....)))))))).))))))))).....((.(((....)))....((......)).........................)).))) ( -25.40)
>consensus
AUUGCAAUUCCCGCUCUUAGCUAUUUUGCUUGGAUUGUUUGGUGGAAAUUCACACCAGAAAUUGUUCAAACGGAAAACACCAUCAAAAAUACUAAUAACCUCAGUCGGAGCA
............(((((..(((.....(.((((((..(((((((........)))))))....)))))).)((......)).....................))).))))). (-19.56 = -19.72 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:07 2006