Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,174,301 – 13,174,392 |
Length | 91 |
Max. P | 0.999262 |
Location | 13,174,301 – 13,174,392 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 98.46 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -23.32 |
Energy contribution | -23.36 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.30 |
Structure conservation index | 0.98 |
SVM decision value | 3.47 |
SVM RNA-class probability | 0.999262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13174301 91 + 23771897 UUUCCAACCCUCGACUUUUGGUUUUUGGCAGUGCUAUCCAUUAGUCACGCGCCGUAUCAAGGUGCUGCCAUCUUGUGUUCCCAAUUUCGAC ..........((((...((((....(((((((((((.....))).)))(((((.......))))))))))..........))))..)))). ( -24.54) >DroSec_CAF1 25822 91 + 1 UUUCCAACCCUCGACUUUUGGUUUUUGGCAGUGCUAUCCAUUAGUCACGCGCCGUAUCAAGGUGCUGCCAUCUUGUGUUCCCAAUUUCGAC ..........((((...((((....(((((((((((.....))).)))(((((.......))))))))))..........))))..)))). ( -24.54) >DroSim_CAF1 24006 91 + 1 UUUCCAACCCUCGACUUUUGGUUUUUGGCAGUGCUAUCCAUUAGUCACGCGCCGUAUCAAGGUGCUGCCAUCUUGUGUUCCCAAUUUCGAC ..........((((...((((....(((((((((((.....))).)))(((((.......))))))))))..........))))..)))). ( -24.54) >DroEre_CAF1 29709 91 + 1 UUUCCAACCCUCGACUUUUGCUUUUUGGCAGUGCUGUCCAUUAGUCACGCGCCAUAUCAAGGUGCUGCCAUCUUGUGUUCCCAAUUUCGAC ..........((((..((.((....(((((((((((.....))).)))(((((.......))))))))))......))....))..)))). ( -21.30) >DroYak_CAF1 24727 91 + 1 UUUCCAACCCUCGACUUUUGGUUUUUGGCAGUGCUAUCCAUUAGUCACGCGCCAUAUCAAGGUGCUGCCAUCUUGUGUUCCCAAUUUCGAC ..........((((...((((....((((.((((((.....))).)))..))))...(((((((....))))))).....))))..)))). ( -24.10) >consensus UUUCCAACCCUCGACUUUUGGUUUUUGGCAGUGCUAUCCAUUAGUCACGCGCCGUAUCAAGGUGCUGCCAUCUUGUGUUCCCAAUUUCGAC ..........((((...((((....(((((((((((.....))).)))(((((.......))))))))))..........))))..)))). (-23.32 = -23.36 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:06 2006