Locus 4635

Sequence ID 3L_DroMel_CAF1
Location 13,172,454 – 13,172,569
Length 115
Max. P 0.836723
window7276

overview

Window 6

Location 13,172,454 – 13,172,569
Length 115
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 74.85
Mean single sequence MFE -22.13
Consensus MFE -14.24
Energy contribution -15.13
Covariance contribution 0.89
Combinations/Pair 1.09
Mean z-score -1.63
Structure conservation index 0.64
SVM decision value 0.74
SVM RNA-class probability 0.836723
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13172454 115 + 23771897
ACCCAGUCAUGUUGCUUGAAUAUUAUUCAAUUCAGCUGG---GUAGCAAUUUACCAUUUAUUAACUUUGGGUAUCUGUACUCGUUAAUAGAAGUAUCUAGUUUUUAUAUUAAAUAAUC
(((((((...((((..(((...)))..))))...)))))---))(((....(((..(((((((((...(((((....)))))))))))))).)))....)))................ ( -22.40)
>DroSec_CAF1 24037 93 + 1
AUCCAAU----UUGGUUGAAUAUUAUUCAAUUCAGCUUGGUGGUAGCAAUUUACCAUUUGUUAAGUUUGGGUAUC-----UCAGAAAAAGAAA----------------UAGAUAAUC
((((((.----..((((((((........)))))))).((((((((....))))))))........))))))...-----.............----------------......... ( -17.30)
>DroSim_CAF1 22198 102 + 1
ACCCAGUCAGGUUGGUUGAAUAUUAUUCAAUUCAGCUUGGUGGUAGCAUUUUACCAUUUCUUAACUUUGGGUAUCUUUACUCGGAAAAAGAAA----------------UAGAUAAUC
......(((((((((((((((...)))))).))))))))).(((((....)))))(((((((...((((((((....))))))))..))))))----------------)........ ( -26.70)
>consensus
ACCCAGUCA_GUUGGUUGAAUAUUAUUCAAUUCAGCUUGGUGGUAGCAAUUUACCAUUUAUUAACUUUGGGUAUCU_UACUCGGAAAAAGAAA________________UAGAUAAUC
((((((.......((((((((........)))))))).((((((((....))))))))........)))))).............................................. (-14.24 = -15.13 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:05 2006