Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,171,714 – 13,171,826 |
Length | 112 |
Max. P | 0.937129 |
Location | 13,171,714 – 13,171,826 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 94.62 |
Mean single sequence MFE | -23.28 |
Consensus MFE | -22.02 |
Energy contribution | -21.86 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.17 |
Mean z-score | -1.37 |
Structure conservation index | 0.95 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13171714 112 + 23771897 --CAAAAUGAAUUUUUCCAGUGUACACCAGGGGUUGGUUGGGUGGUUCACACACCCCCAUUCGUGCCUUGUUUCAUCGAUAUUUCUUUUUUCAAUUUAUGCUCAUUUAUUCUAU --......((((......((((((...(((((..((..((((.(((......)))))))..))..))))).......((....))...........)))))).....))))... ( -20.80) >DroSec_CAF1 23304 112 + 1 --CAAAAUGGAUUUUUCCAGUGUAAACCAGGGGUUGUUUGGGUGGUUCACACACCCCCAUUCGUGCCUUGUUUCAUCGAUAUUUCUUUUUUCAAUUUAUGCUCAUUUAUUCUAU --.....((((....))))(((((((.(((((..((..((((.(((......)))))))..))..))))).......((....)).........)))))))............. ( -24.20) >DroSim_CAF1 21466 112 + 1 --CAAAAUGGAUUUUUCCAGUGUAAACCAGGGGUUGUUUGGGUGGUUCACACACCCCCAUUCGUGCCUUGUUUCAUCGAUAUUUCUUUUUUCAAUUUAUGCUCAUUUAUUCUAU --.....((((....))))(((((((.(((((..((..((((.(((......)))))))..))..))))).......((....)).........)))))))............. ( -24.20) >DroEre_CAF1 26359 114 + 1 CACAACUUGGGUUUUUCCAGUGUAAACCGGGGGUUGUUUGGGUGGUUCACACACCCCCAUUCGUGCCUUGUUUCAUCGAUAUUUCUUUUUUCAAUUUAUGCUCAUUUAUUCUAU .......((((....))))(((((((.(((((..((..((((.(((......)))))))..))..))))).......((....)).........)))))))............. ( -22.40) >DroYak_CAF1 22053 114 + 1 CACAACAUAGAUUUUUGCAGUGUAGGCCAGGGGUUGUUUGGGCGGUUCACACACCCCCAUUCGUGCCUUGUUUCAUCGAUAUUUCUUUUUUCAAUUUAUGCUCAUUUAUUCUAU ......(((((....((.((((((((.(((((..((..((((.(((......)))))))..))..))))).......((....)).........)))))))))).....))))) ( -24.80) >consensus __CAAAAUGGAUUUUUCCAGUGUAAACCAGGGGUUGUUUGGGUGGUUCACACACCCCCAUUCGUGCCUUGUUUCAUCGAUAUUUCUUUUUUCAAUUUAUGCUCAUUUAUUCUAU ......(((((.......((((((((.(((((..((..((((.(((......)))))))..))..))))).......((....)).........)))))))).......))))) (-22.02 = -21.86 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:02 2006