| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,169,211 – 13,169,305 |
| Length | 94 |
| Max. P | 0.728534 |
| Location | 13,169,211 – 13,169,305 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 89.36 |
| Mean single sequence MFE | -29.06 |
| Consensus MFE | -21.22 |
| Energy contribution | -22.34 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13169211 94 + 23771897 UUGCACUUGUUUAUAAACCUGAACUUGCUUUCAGUUUACCAGGUUUUUGGGCUUCGUAACUCACCGAGCUAAUGGGGCUGAAAGCAGGUGUUGG .................((...(((((((((((((...((((((((.((((........))))..)))))..))).)))))))))))))...)) ( -29.60) >DroSec_CAF1 20777 94 + 1 UUGCACUUGUUUAUAAACCUAAACUCGCUCUCAGUUUGCCAGGUUUUUGGGUUACGUAACUCACCUAGCUAAUGGGGCUGAAAGCAGGUGUUGG ..(((((((((((......)))))..(((.((((((..(((((((..((((((....))))))...))))..))))))))).)))))))))... ( -26.20) >DroSim_CAF1 18953 94 + 1 UUGCACUUGUUUAUAAACCUGAAUUCGCUUUCAGUUUGCCAGGUUUUUGGGCUUCGUAACUCACCCAGCUAAUGGGGCUGAAAGCAGGUGUUAG ..(((((((((((......)))))..(((((((((((((.(((((....))))).))))....((((.....)))))))))))))))))))... ( -28.50) >DroEre_CAF1 24000 92 + 1 UUGCACUUGCUUAUAAGCC-GAACUCGCUUUCAGUUUGCCAGCUUUUUGGGCC-UGUAACUCACCGAGCUAAUGGGCCUGAAAACAGGUGCUAG ..(((((((((..(((((.-(((......))).)))))..)))((((..((((-(((..(((...)))...)))))))..)))).))))))... ( -29.70) >DroYak_CAF1 19458 94 + 1 UGGCACUUGUUUAAAAGCCUGAACUCGCUUUCAGUUUGCCAGGUUUUUGGGCCUUGUAACUCACCGAGCUAAUGGGGCUGAAAACAGGUGUAAG ..(((((((((((((((((((((((.......))))...))))))))).(((((..(..(((...)))...)..)))))..))))))))))... ( -31.30) >consensus UUGCACUUGUUUAUAAACCUGAACUCGCUUUCAGUUUGCCAGGUUUUUGGGCUUCGUAACUCACCGAGCUAAUGGGGCUGAAAGCAGGUGUUAG ..(((((((((((......)))))..((((((((((..(((....(((((.............)))))....)))))))))))))))))))... (-21.22 = -22.34 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:01 2006